Search result

BaseInfo

ncRNA ID	novel_osa_miR2664
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:230595-230724 [+]
Reference genome	IRGSP-1.0
Source	SRR1849783
Length	21
Mature sequence(if miRNA)	110 - AUGACGGAAGGGGUUUUCGGA - 130
Stem-loop(if miRNA)	-- A             A                 A       A        -------------     U   C AAAACCCCUUCCG UAUCUGGUCAAACGUUC AUGUGAC CCUAAAAA             UUUGC U   | ||||||||||||| ||||||||||||||||| ||||||| ||||||||             ||||| U   G UUUUGGGGAAGGC GUAGGCCAGUUUGCAGG UACACUG GGGUUUUU             AAACG U AG C             A                 C       C        UAAAGAACAAAUC     U
Stem-loop sequence	CAAAAACCCCUUCCGAUAUCUGGUCAAACGUUCAAUGUGACACCUAAAAAUUUGCUUUUUGCAAACUAAACAAGAAAUUUUUUGGGCGUCACAUCGGACGUUUGACCGGAUGACGGAAGGGGUUUUCGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015782675.1	ncRNA:21   AGGCUUUUGGGGAAGGCAGUA   1   |||||||||||||||||*||| targets:46   UCCGAAAACCCCUUCCGACAU   66 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase ATL41 (LOC9269942), mRNA	E3 ubiquitin-protein ligase ATL41(LOC9269942)	coding protein	psRNATarget
AK121199.1	ncRNA:21   AGGCUUUUGGGGAAGGCAGUA   1   *||||||||||||||||*||| targets:1531   CCCGAAAACCCCUUCCGACAU   1551 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023087G06, full insert sequence	NA	coding protein	psRNATarget
CT831729.1	ncRNA:21   AGGCUUUUGGGGAAGGCAGUA   1   |||*|||||||||||||*||| targets:517   UCCAAAAACCCCUUCCGACAU   537 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117A02, full insert sequence	NA	coding protein	psRNATarget