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BaseInfo

ncRNA ID	novel_osa_miR2662
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:22488456-22488536 [-]
Reference genome	IRGSP-1.0
Source	SRR1849783
Length	23
Mature sequence(if miRNA)	1 - CAGAUUCAUAGUACUAGGAUACG - 23
Stem-loop(if miRNA)	--                           AG   -A   UG   UAUCUUAGUACUAUGGAUUUGGGCAGG  CUU  CUA  G   |||||||||||||||||||||||||||  |||  |||   AUAGGAUCAUGAUACUUAGACCUGUUC  GGA  GGU  A GC                           GA   CG   UU
Stem-loop sequence	UAUCUUAGUACUAUGGAUUUGGGCAGGAGCUUACUAUGGAUUUGGGCAGGAGCUUGUCCAGAUUCAUAGUACUAGGAUACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK063452.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   |*||||||||||||||||||||| targets:117   CAUAUCCUAGUACUAUGAAUCUG   139 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:001-115-G03, full insert sequence	NA	coding protein	psRNATarget
AK119339.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   |*|||=||||||||||||||||| targets:308   CAUAUUCUAGUACUAUGAAUCUG   330 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-131-D05, full insert sequence	NA	coding protein	psRNATarget
AK107495.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   |*|||=||||||||||||||||| targets:928   CAUAUUCUAGUACUAUGAAUCUG   950 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-129-D07, full insert sequence	NA	coding protein	psRNATarget
AK107672.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   =||||||||||||||*||||||| targets:875   UGUAUCCUAGUACUACGAAUCUG   897 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-131-H10, full insert sequence	NA	coding protein	psRNATarget
AK108858.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   =*|||=|||||=||||||||||| targets:789   UAUAUUCUAGUGCUAUGAAUCUG   811 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-152-B05, full insert sequence	NA	coding protein	psRNATarget
XM_015790942.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   =*|||=|||||=||||||||||| targets:783   UAUAUUCUAGUGCUAUGAAUCUG   805 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325152 (LOC4325152), mRNA	uncharacterized LOC4325152(LOC4325152)	coding protein	psRNATarget
XM_015770193.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   |*|||=||||||||||||||||* targets:1076   CAUAUUCUAGUACUAUGAAUCUA   1098 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA	uncharacterized LOC4329136(LOC4329136)	coding protein	psRNATarget
AK243489.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   |*|||=|*||||||||||||||| targets:2503   CAUAUUCCAGUACUAUGAAUCUG   2525 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J100073M12, full insert sequence	NA	coding protein	psRNATarget
AK242632.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   |*|||=|||||||*||||||||| targets:323   CAUAUUCUAGUACGAUGAAUCUG   345 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090022M05, full insert sequence	NA	coding protein	psRNATarget
AK288631.1	ncRNA:23   GCA-----UAGGAUCAUGAUACUUAGAC   1   =||-----||=|||||||||*||||||| targets:4116   UGUGACACAUUCUAGUACUACGAAUCUG   4143 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
XM_015759388.1	ncRNA:23   GCA-----UAGGAUCAUGAUACUUAGAC   1   =||-----|||||=||||||*||||||| targets:410   UGUGACACAUCCUGGUACUACGAAUCUG   437 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA	ent-cassadiene C2-hydroxylase-like(LOC4348721)	coding protein	psRNATarget
XM_015782023.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   |*|||||*|||||*||||||||| targets:2355   CAUAUCCAAGUACAAUGAAUCUG   2377 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group zinc transporter 9 (LOC4339080), transcript variant X2, mRNA	zinc transporter 9(LOC4339080)	coding protein	psRNATarget
XM_015759903.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   ***|||=||*||||||||||||| targets:2102   GACAUCUUAAUACUAUGAAUCUG   2124 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group serine--tRNA ligase, chloroplastic/mitochondrial (LOC4350906), mRNA	serine--tRNA ligase, chloroplastic/mitochondrial(LOC4350906)	coding protein	psRNATarget
HI403832.1	ncRNA:23   GCA-----UAGGAUCAUGAUACUUAGAC   1   =||-----||=|||||||||*||||||| targets:2   UGUGAUACAUUCUAGUACUACGAAUCUG   29 Target Full Sequence	2.5	Sequence 1957 from Patent EP2074227	NA	coding protein	psRNATarget
JB164293.1	ncRNA:23   GCA-----UAGGAUCAUGAUACUUAGAC   1   =||-----||=|||||||||*||||||| targets:2   UGUGAUACAUUCUAGUACUACGAAUCUG   29 Target Full Sequence	2.5	Sequence 1957 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235962.1	ncRNA:23   GCA-----UAGGAUCAUGAUACUUAGAC   1   =||-----||=|||||||||*||||||| targets:2   UGUGAUACAUUCUAGUACUACGAAUCUG   29 Target Full Sequence	2.5	Sequence 1957 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015782022.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   |*|||||*|||||*||||||||| targets:1313   CAUAUCCAAGUACAAUGAAUCUG   1335 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group zinc transporter 9 (LOC4339080), transcript variant X1, mRNA	zinc transporter 9(LOC4339080)	coding protein	psRNATarget
CT833051.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   ***|||=||*||||||||||||| targets:601   AACAUCUUAAUACUAUGAAUCUG   623 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN042I02, full insert sequence	NA	coding protein	psRNATarget
HI403499.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   |**||||||*||||=|||||||| targets:13   CACAUCCUAAUACUGUGAAUCUG   35 Target Full Sequence	2.5	Sequence 1624 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235629.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   |**||||||*||||=|||||||| targets:13   CACAUCCUAAUACUGUGAAUCUG   35 Target Full Sequence	2.5	Sequence 1624 from Patent EP2985353	NA	coding protein	psRNATarget
JB163960.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   |**||||||*||||=|||||||| targets:13   CACAUCCUAAUACUGUGAAUCUG   35 Target Full Sequence	2.5	Sequence 1624 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015761638.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   |**||||||||||||*||||||* targets:3907   CACAUCCUAGUACUACGAAUCUA   3929 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107278048), mRNA	putative receptor protein kinase ZmPK1(LOC107278048)	coding protein	psRNATarget
XM_015790044.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   ||*|*=|||*||||||||||||| targets:737   CGCAAUCUAAUACUAUGAAUCUG   759 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278089 (LOC107278089), mRNA	uncharacterized LOC107278089(LOC107278089)	coding protein	psRNATarget
AK288418.1	ncRNA:23   GCA-----UAGGAUCAUGAUACUUAGAC   1   =||-----||||||*|||||*||||||| targets:879   UGUGACACAUCCUAAUACUACGAAUCUG   906 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090031L18, full insert sequence	NA	coding protein	psRNATarget
LQ235678.1	ncRNA:23   GCA-----UAGGAUCAUGAUACUUAGAC   1   =||-----||||||*|||||*||||||| targets:144   UGUGACACAUCCUAAUACUACGAAUCUG   171 Target Full Sequence	2.5	Sequence 1673 from Patent EP2985353	NA	coding protein	psRNATarget
JB164009.1	ncRNA:23   GCA-----UAGGAUCAUGAUACUUAGAC   1   =||-----||||||*|||||*||||||| targets:144   UGUGACACAUCCUAAUACUACGAAUCUG   171 Target Full Sequence	2.5	Sequence 1673 from Patent EP2559767	NA	coding protein	psRNATarget
HI403548.1	ncRNA:23   GCA-----UAGGAUCAUGAUACUUAGAC   1   =||-----||||||*|||||*||||||| targets:144   UGUGACACAUCCUAAUACUACGAAUCUG   171 Target Full Sequence	2.5	Sequence 1673 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236420.1	ncRNA:23   GCA-----UAGGAUCAUGAUACUUAGAC   1   =||-----|||*||||||*||||||||| targets:15   UGUGACACAUCAUAGUACAAUGAAUCUG   42 Target Full Sequence	2.5	Sequence 2415 from Patent EP2985353	NA	coding protein	psRNATarget
JB164751.1	ncRNA:23   GCA-----UAGGAUCAUGAUACUUAGAC   1   =||-----|||*||||||*||||||||| targets:15   UGUGACACAUCAUAGUACAAUGAAUCUG   42 Target Full Sequence	2.5	Sequence 2415 from Patent EP2559767	NA	coding protein	psRNATarget
HI404290.1	ncRNA:23   GCA-----UAGGAUCAUGAUACUUAGAC   1   =||-----|||*||||||*||||||||| targets:15   UGUGACACAUCAUAGUACAAUGAAUCUG   42 Target Full Sequence	2.5	Sequence 2415 from Patent EP2074227	NA	coding protein	psRNATarget
CT836481.1	ncRNA:23   GCAUAGGAUCAUGAUACUUAGAC   1   =*||||*||*||||||||||||* targets:349   UAUAUCAUAAUACUAUGAAUCUU   371 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021E02, full insert sequence	NA	coding protein	psRNATarget