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BaseInfo

ncRNA ID	novel_osa_miR2655
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:1220186-1220287 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1556014
Length	21
Mature sequence(if miRNA)	82 - UGCGUGUGUGUGUGUAAGGCC - 102
Stem-loop(if miRNA)	--U      -G   G     -     AGACUC    AU         -----G    U    GCGUGU  UGU UGUAA GGCCA      CAAC  AUAUGUAUA      UUGG G    ||||||  ||| ||||| |||||      ||||  |||||||||      ||||    CGUACA  ACA ACAUU CUGGU      GUUG  UAUACAUAU      AAUC A AAC      AG   -     G     ------    AU         AAUAUA    A
Stem-loop sequence	UGCGUGUGUGUGUGUAAGGCCAAGACUCCAACAUAUAUGUAUAGUUGGUGAACUAAAUAUAAUAUACAUAUUAGUUGUGGUCGUUACAACAGAACAUGCCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107001.1	ncRNA:21   CCGGAAUGUGUGUGUGUGCGU   1   *|||||=|||||||=|||||| targets:80   UGCCUUGCACACACGCACGCA   100 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-120-C06, full insert sequence	NA	coding protein	psRNATarget
XM_015790506.1	ncRNA:21   CCGGAAUGUGUGUGUGUGCGU   1   *|||||=|||||||=|||||| targets:140   UGCCUUGCACACACGCACGCA   160 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable leucine-rich repeat receptor-like protein kinase At1g68400 (LOC4325931), mRNA	probable leucine-rich repeat receptor-like protein kinase At1g68400(LOC4325931)	coding protein	psRNATarget
XM_015755640.1	ncRNA:21   CCGGAAUGUGUGUGUGUGCGU   1   ****||||||||||||||||| targets:1139   UAAGUUACACACACACACGCA   1159 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4327842), transcript variant X2, mRNA	disease resistance protein RGA2(LOC4327842)	coding protein	psRNATarget
XM_015755634.1	ncRNA:21   CCGGAAUGUGUGUGUGUGCGU   1   ****||||||||||||||||| targets:1139   UAAGUUACACACACACACGCA   1159 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4327842), transcript variant X1, mRNA	disease resistance protein RGA2(LOC4327842)	coding protein	psRNATarget
BT130888.1	ncRNA:21   CCGGAAUGUGUGUGUGUGCGU   1   ***||*||||||||||||||| targets:468   UCGCUCACACACACACACGCA   488 Target Full Sequence	2.0	Oryza sativa clone RRlibD00020 mRNA sequence	NA	coding protein	psRNATarget
BT132097.1	ncRNA:21   CCGGAAUGUGUGUGUGUGCGU   1   ***||*||||||||||||||| targets:514   UCGCUCACACACACACACGCA   534 Target Full Sequence	2.0	Oryza sativa clone RRlibD00012 mRNA sequence	NA	coding protein	psRNATarget
BT132531.1	ncRNA:21   CCGGAAUGUGUGUGUGUGCGU   1   ***||*||||||||||||||| targets:522   UCGCUCACACACACACACGCA   542 Target Full Sequence	2.0	Oryza sativa clone RRlibC00213 mRNA sequence	NA	coding protein	psRNATarget
AK287634.1	ncRNA:21   CCGGAAUGUGUGUGUGUGCGU   1   ***|||||||||||||||*|| targets:1321   AUACUUACACACACACACACA   1341 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065076C17, full insert sequence	NA	coding protein	psRNATarget