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BaseInfo

ncRNA ID	novel_osa_miR2653
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:24758084-24758240 [+]
Reference genome	IRGSP-1.0
Source	SRR1849781
Length	23
Mature sequence(if miRNA)	135 - GUAGGAAAGUUUGAUGUGACGGA - 157
Stem-loop(if miRNA)	--UA          A                      C             C     -UCUAA   CAACAAAACUUUC     UCACAUUAAA CUUUCCUACACACACAAACUUU AACUUUUCCGUCA AUCGU      UUU             A     |||||||||| |||||||||||||||||||||| ||||||||||||| |||||      |||             A     AGUGUAGUUU GAAAGGAUGUGUGUGUUUGAAA UUGAAAAGGUAGU UAGCA      AAA             U AGGC          -                      A             U     CCACAC   UCAAGUACGAUUU
Stem-loop sequence	UAUCACAUUAAAACUUUCCUACACACACAAACUUUCAACUUUUCCGUCACAUCGUUCUAAUUUCAACAAAACUUUCAAUUUUAGCAUGAACUAAACACACCACGAUUUGAUGGAAAAGUUAAAAGUUUGUGUGUGUAGGAAAGUUUGAUGUGACGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015767117.1	ncRNA:23   AGGCAGUGUAGUUUGAAAGGAUG   1   |||||||||||=||||||||||| targets:1117   UCCGUCACAUCGAACUUUCCUAC   1139 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266427 (LOC9266427), transcript variant X8, mRNA	uncharacterized LOC9266427(LOC9266427)	coding protein	psRNATarget
AK060538.1	ncRNA:23   AGGCAGUGUAGUUUGAAAGGAUG   1   |=||||=||||=||||||||||| targets:1750   UUCGUCGCAUCGAACUUUCCUAC   1772 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-021-E02, full insert sequence	NA	coding protein	psRNATarget
XM_015768960.1	ncRNA:23   AGGCAGUGUAGUUUGAAAGGAUG   1   |=||||=||||=||||||||||| targets:1819   UUCGUCGCAUCGAACUUUCCUAC   1841 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325023 (LOC4325023), mRNA	uncharacterized LOC4325023(LOC4325023)	coding protein	psRNATarget
AK067779.1	ncRNA:23   AGGCAGUGUAGUUUGAAAGGAUG   1   |=||||=||||=||||||||||| targets:1859   UUCGUCGCAUCGAACUUUCCUAC   1881 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013117J21, full insert sequence	NA	coding protein	psRNATarget
AK242132.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |||*||||||||||-||||||||| targets:453   UCCAUCACAUCAAAACUUUCCUAC   476 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J075149D21, full insert sequence	NA	coding protein	psRNATarget
AK243405.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |||*||||||||||-||||||||| targets:458   UCCAUCACAUCAAAACUUUCCUAC   481 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J100065D18, full insert sequence	NA	coding protein	psRNATarget
AK288889.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |||*||||||||||-||||||||| targets:214   UCCAUCACAUCAAAACUUUCCUAC   237 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090080B10, full insert sequence	NA	coding protein	psRNATarget
XM_015791683.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |||*||||||||||-||||||||| targets:414   UCCAUCACAUCAAAACUUUCCUAC   437 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4324388 (LOC4324388), mRNA	uncharacterized LOC4324388(LOC4324388)	coding protein	psRNATarget
AK066274.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |||*||||||||||-||||||||| targets:861   UCCAUCACAUCAAAACUUUCCUAC   884 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013061O18, full insert sequence	NA	coding protein	psRNATarget
XM_015756139.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |||*||||||||||-||||||||| targets:24   UCCAUCACAUCAAAACUUUCCUAC   47 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group protein GAMETE EXPRESSED 1 (LOC4347181), transcript variant X3, mRNA	protein GAMETE EXPRESSED 1(LOC4347181)	coding protein	psRNATarget
XM_015756137.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |||*||||||||||-||||||||| targets:24   UCCAUCACAUCAAAACUUUCCUAC   47 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group protein GAMETE EXPRESSED 1 (LOC4347181), transcript variant X1, mRNA	protein GAMETE EXPRESSED 1(LOC4347181)	coding protein	psRNATarget
XM_015756138.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |||*||||||||||-||||||||| targets:24   UCCAUCACAUCAAAACUUUCCUAC   47 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group protein GAMETE EXPRESSED 1 (LOC4347181), transcript variant X2, mRNA	protein GAMETE EXPRESSED 1(LOC4347181)	coding protein	psRNATarget
AK289097.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |||*||||||||||-||||||||| targets:1222   UCCAUCACAUCAAAACUUUCCUAC   1245 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090096D18, full insert sequence	NA	coding protein	psRNATarget
AK288250.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |||*||||||||||-||||||||| targets:2804   UCCAUCACAUCAAAACUUUCCUAC   2827 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090015A01, full insert sequence	NA	coding protein	psRNATarget
AK067773.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   ||=*||||||||||-||||||||| targets:659   UCUAUCACAUCAAAACUUUCCUAC   682 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013118K04, full insert sequence	NA	coding protein	psRNATarget
AK288799.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |=|*||||||||||-||||||||| targets:1995   UUCAUCACAUCAAAACUUUCCUAC   2018 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090070K11, full insert sequence	NA	coding protein	psRNATarget
AK107438.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |==*||||||||||-||||||||| targets:1558   UUUAUCACAUCAAAACUUUCCUAC   1581 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-128-B02, full insert sequence	NA	coding protein	psRNATarget
AK122114.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |==*||||||||||-||||||||| targets:2194   UUUAUCACAUCAAAACUUUCCUAC   2217 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033128A11, full insert sequence	NA	coding protein	psRNATarget
XM_015791064.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |==*||||||||||-||||||||| targets:4299   UUUAUCACAUCAAAACUUUCCUAC   4322 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group snakin-1 (LOC9267044), transcript variant X6, mRNA	snakin-1(LOC9267044)	coding protein	psRNATarget
XM_015791063.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |==*||||||||||-||||||||| targets:4389   UUUAUCACAUCAAAACUUUCCUAC   4412 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group snakin-1 (LOC9267044), transcript variant X5, mRNA	snakin-1(LOC9267044)	coding protein	psRNATarget
XM_015791061.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |==*||||||||||-||||||||| targets:4531   UUUAUCACAUCAAAACUUUCCUAC   4554 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group snakin-1 (LOC9267044), transcript variant X3, mRNA	snakin-1(LOC9267044)	coding protein	psRNATarget
XM_015791062.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |==*||||||||||-||||||||| targets:4534   UUUAUCACAUCAAAACUUUCCUAC   4557 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group snakin-1 (LOC9267044), transcript variant X4, mRNA	snakin-1(LOC9267044)	coding protein	psRNATarget
XM_015791060.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |==*||||||||||-||||||||| targets:6932   UUUAUCACAUCAAAACUUUCCUAC   6955 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group snakin-1 (LOC9267044), transcript variant X2, mRNA	snakin-1(LOC9267044)	coding protein	psRNATarget
XM_015791059.1	ncRNA:23   AGGCAGUGUAGUUU-GAAAGGAUG   1   |==*||||||||||-||||||||| targets:7181   UUUAUCACAUCAAAACUUUCCUAC   7204 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group snakin-1 (LOC9267044), transcript variant X1, mRNA	snakin-1(LOC9267044)	coding protein	psRNATarget
AK065848.1	ncRNA:23   AGGCAGUGUAGUUUGAAAGGAUG   1   |==*||||||*|||||||||||| targets:3550   UUUAUCACAUAAAACUUUCCUAC   3572 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013041B11, full insert sequence	NA	coding protein	psRNATarget
XM_015783988.1	ncRNA:23   AGGCAGUGUAGUUUGAAAGGAUG   1   |==*||||||*|||||||||||| targets:784   UUUAUCACAUAAAACUUUCCUAC   806 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group kinesin-4 (LOC4339353), transcript variant X1, mRNA	kinesin-4(LOC4339353)	coding protein	psRNATarget
XM_015772490.1	ncRNA:21   GCAGUGUAGUUU-GAAAGGAUG   1   |*||||||||||-||||||||| targets:1   CAUCACAUCAAAACUUUCCUAC   22 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group heat stress transcription factor B-4d (LOC107277264), mRNA	heat stress transcription factor B-4d(LOC107277264)	coding protein	psRNATarget