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BaseInfo

ncRNA ID	novel_osa_miR2652
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:6643293-6643346 [+]
Reference genome	IRGSP-1.0
Source	SRR1849781
Length	23
Mature sequence(if miRNA)	1 - UCCUAGUACUAUGAAUCUGGACA - 23
Stem-loop(if miRNA)	--UC       U           CAUA     CUAGUAC AUGAAUCUGGA    C     ||||||| |||||||||||     GAUCAUG UGCUUAGACCU    C AUAA       U           AUCU
Stem-loop sequence	UCCUAGUACUAUGAAUCUGGACAUACCUCUAUCCAGAUUCGUUGUACUAGAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288793.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   ||||||||||||||||||||||| targets:859   UGUCCAGAUUCAUAGUACUAGGA   881 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090070C08, full insert sequence	NA	coding protein	psRNATarget
AK288957.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   ||||||||||||||||||||||| targets:761   UGUCCAGAUUCAUAGUACUAGGA   783 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090084B06, full insert sequence	NA	coding protein	psRNATarget
AK119339.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   ||||=|||||||||||||||||| targets:338   UGUCUAGAUUCAUAGUACUAGGA   360 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-131-D05, full insert sequence	NA	coding protein	psRNATarget
AK101936.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||||||||||=||||||||||| targets:1924   UGUCCAGAUUCGUAGUACUAGGA   1946 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033074D16, full insert sequence	NA	coding protein	psRNATarget
XM_015770193.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||||||||||=||||||||||| targets:1110   UGUCCAGAUUCGUAGUACUAGGA   1132 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA	uncharacterized LOC4329136(LOC4329136)	coding protein	psRNATarget
AK071898.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   ||||=||||||=||||||||||| targets:2716   UGUCUAGAUUCGUAGUACUAGGA   2738 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013059B05, full insert sequence	NA	coding protein	psRNATarget
XM_015764610.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   ||||=||||||=||||||||||| targets:2732   UGUCUAGAUUCGUAGUACUAGGA   2754 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein NPY4 (LOC4352652), mRNA	BTB/POZ domain-containing protein NPY4(LOC4352652)	coding protein	psRNATarget
HI403965.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   ||||||*|||||||||||||||| targets:32   UGUCCAAAUUCAUAGUACUAGGA   54 Target Full Sequence	1.0	Sequence 2090 from Patent EP2074227	NA	coding protein	psRNATarget
JB164426.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   ||||||*|||||||||||||||| targets:32   UGUCCAAAUUCAUAGUACUAGGA   54 Target Full Sequence	1.0	Sequence 2090 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236095.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   ||||||*|||||||||||||||| targets:32   UGUCCAAAUUCAUAGUACUAGGA   54 Target Full Sequence	1.0	Sequence 2090 from Patent EP2985353	NA	coding protein	psRNATarget
HI404157.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||||||||||||*||||||||| targets:52   UGUCCAGAUUCAUUGUACUAGGA   74 Target Full Sequence	1.5	Sequence 2282 from Patent EP2074227	NA	coding protein	psRNATarget
JB164618.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||||||||||||*||||||||| targets:52   UGUCCAGAUUCAUUGUACUAGGA   74 Target Full Sequence	1.5	Sequence 2282 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236287.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||||||||||||*||||||||| targets:52   UGUCCAGAUUCAUUGUACUAGGA   74 Target Full Sequence	1.5	Sequence 2282 from Patent EP2985353	NA	coding protein	psRNATarget
JB164751.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||||||||||||*||||||||| targets:54   UGUCCAGAUUCAUUGUACUAGGA   76 Target Full Sequence	1.5	Sequence 2415 from Patent EP2559767	NA	coding protein	psRNATarget
HI404290.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||||||||||||*||||||||| targets:54   UGUCCAGAUUCAUUGUACUAGGA   76 Target Full Sequence	1.5	Sequence 2415 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236420.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||||||||||||*||||||||| targets:54   UGUCCAGAUUCAUUGUACUAGGA   76 Target Full Sequence	1.5	Sequence 2415 from Patent EP2985353	NA	coding protein	psRNATarget
HI404032.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||=||||||=|||||||||||= targets:62   UGUUCAGAUUUAUAGUACUAGGG   84 Target Full Sequence	2.5	Sequence 2157 from Patent EP2074227	NA	coding protein	psRNATarget
JB164493.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||=||||||=|||||||||||= targets:62   UGUUCAGAUUUAUAGUACUAGGG   84 Target Full Sequence	2.5	Sequence 2157 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236162.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||=||||||=|||||||||||= targets:62   UGUUCAGAUUUAUAGUACUAGGG   84 Target Full Sequence	2.5	Sequence 2157 from Patent EP2985353	NA	coding protein	psRNATarget
JB164318.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||||||||||||||||||||*| targets:89   UGUCCAGAUUCAUAGUACUAGAA   111 Target Full Sequence	1.5	Sequence 1982 from Patent EP2559767	NA	coding protein	psRNATarget
HI403857.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||||||||||||||||||||*| targets:89   UGUCCAGAUUCAUAGUACUAGAA   111 Target Full Sequence	1.5	Sequence 1982 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235987.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||||||||||||||||||||*| targets:89   UGUCCAGAUUCAUAGUACUAGAA   111 Target Full Sequence	1.5	Sequence 1982 from Patent EP2985353	NA	coding protein	psRNATarget
AK287908.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||=|||||||||||||||||*| targets:1251   UGUUCAGAUUCAUAGUACUAGAA   1273 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065212K06, full insert sequence	NA	coding protein	psRNATarget
AK099750.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   ||||||*||||=||||||||||| targets:661   UGUCCAAAUUCGUAGUACUAGGA   683 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013092A18, full insert sequence	NA	coding protein	psRNATarget
CT831784.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   ||||||*||||=||||||||||| targets:667   UGUCCAAAUUCGUAGUACUAGGA   689 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA225J14, full insert sequence	NA	coding protein	psRNATarget
AK066728.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||*|||||||=||||||||||| targets:1851   UGUGCAGAUUCGUAGUACUAGGA   1873 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013075E04, full insert sequence	NA	coding protein	psRNATarget
AK063200.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||||||||||||*||||||||* targets:521   UGUCCAGAUUCAUUGUACUAGGU   543 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-112-C07, full insert sequence	NA	coding protein	psRNATarget
AK288804.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   *|||||||||||||*|||||||| targets:2553   GGUCCAGAUUCAUAAUACUAGGA   2575 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090071D13, full insert sequence	NA	coding protein	psRNATarget
AK120794.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |*|||=|||||=||||||||||| targets:1568   UAUCCGGAUUCGUAGUACUAGGA   1590 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023012B12, full insert sequence	NA	coding protein	psRNATarget
XM_015778463.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |*|||=|||||=||||||||||| targets:1629   UAUCCGGAUUCGUAGUACUAGGA   1651 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cis-zeatin O-glucosyltransferase 1 (LOC4336629), mRNA	cis-zeatin O-glucosyltransferase 1(LOC4336629)	coding protein	psRNATarget
XM_015767398.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |*||=||||||=||||||||||| targets:3797   UAUCUAGAUUCGUAGUACUAGGA   3819 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g21300 (LOC9271215), transcript variant X5, mRNA	pentatricopeptide repeat-containing protein At4g21300(LOC9271215)	coding protein	psRNATarget
XM_015767397.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |*||=||||||=||||||||||| targets:3800   UAUCUAGAUUCGUAGUACUAGGA   3822 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g21300 (LOC9271215), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At4g21300(LOC9271215)	coding protein	psRNATarget
XM_015767396.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |*||=||||||=||||||||||| targets:3945   UAUCUAGAUUCGUAGUACUAGGA   3967 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g21300 (LOC9271215), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At4g21300(LOC9271215)	coding protein	psRNATarget
LQ236674.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |*|||||||||||||||||||*| targets:41   UUUCCAGAUUCAUAGUACUAGAA   63 Target Full Sequence	1.5	Sequence 2669 from Patent EP2985353	NA	coding protein	psRNATarget
JB165005.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |*|||||||||||||||||||*| targets:41   UUUCCAGAUUCAUAGUACUAGAA   63 Target Full Sequence	1.5	Sequence 2669 from Patent EP2559767	NA	coding protein	psRNATarget
HI404544.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |*|||||||||||||||||||*| targets:41   UUUCCAGAUUCAUAGUACUAGAA   63 Target Full Sequence	1.5	Sequence 2669 from Patent EP2074227	NA	coding protein	psRNATarget
AK070309.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   ||||||*||||||||||||||*| targets:639   UGUCCAAAUUCAUAGUACUAGUA   661 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023047B15, full insert sequence	NA	coding protein	psRNATarget
LQ236231.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |*||=|||||||||*|||||||| targets:54   UAUCUAGAUUCAUAAUACUAGGA   76 Target Full Sequence	2.5	Sequence 2226 from Patent EP2985353	NA	coding protein	psRNATarget
JB164562.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |*||=|||||||||*|||||||| targets:54   UAUCUAGAUUCAUAAUACUAGGA   76 Target Full Sequence	2.5	Sequence 2226 from Patent EP2559767	NA	coding protein	psRNATarget
HI404101.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |*||=|||||||||*|||||||| targets:54   UAUCUAGAUUCAUAAUACUAGGA   76 Target Full Sequence	2.5	Sequence 2226 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015766595.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||*|||=|||||*||||||||| targets:2006   UGUACAGGUUCAUUGUACUAGGA   2028 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4324954), transcript variant X4, mRNA	glutathione S-transferase T3(LOC4324954)	coding protein	psRNATarget
XM_015766594.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||*|||=|||||*||||||||| targets:2006   UGUACAGGUUCAUUGUACUAGGA   2028 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4324954), transcript variant X3, mRNA	glutathione S-transferase T3(LOC4324954)	coding protein	psRNATarget
XM_015766593.1	ncRNA:23   ACAGGUCUAAGUAUCAUGAUCCU   1   |||*|||=|||||*||||||||| targets:2006   UGUACAGGUUCAUUGUACUAGGA   2028 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4324954), transcript variant X2, mRNA	glutathione S-transferase T3(LOC4324954)	coding protein	psRNATarget