Search result

BaseInfo

ncRNA ID	novel_osa_miR2651
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:43201427-43201643 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1556014
Length	24
Mature sequence(if miRNA)	194 - ACAUCUUAUAAUCUGAAACGGAGG - 217
Stem-loop(if miRNA)	--                      G        A  -CA    CAA   --     AUA  C   U            ACAUUA    AU   C       A UU   AUU   UCUGUUUCAGGUUAUAAGAUGU UUGACUUU AU   AAGU   ACU  GUUUU   GA AAA AUAGUAAUAUUU      CCAA  UAG UUUAUUA A  AAU   A   |||||||||||||||||||||| |||||||| ||   ||||   |||  |||||   || ||| ||||||||||||      ||||  ||| ||||||| |  |||   AGGCAAAGUCUAAUAUUCUACA AACUGAAA UA   UUCA   UGG  CAAAA   CU UUU UAUUAUUAUAAA      GGUU  AUU AAAUAAU U  UUA   A GG                      A        C  AAA    AAC   UU     -AC  A   U            -AACUG    CU   U       A UU   AUA
Stem-loop sequence	UCUGUUUCAGGUUAUAAGAUGUGUUGACUUUAAUCAAAGUCAAACUGUUUUAUAGACAAAUAUAGUAAUAUUUACAUUACCAAAUUAGCUUUAUUAAAUUAAUAUUAAAUAAUUUUUAUAAUAAAUUUAUCUUGGGUCAAAAAUAUUAUUAUUUUUAUCCAAAAACUUGGUCAAACUUAAAAUCAAAGUCAAAACAUCUUAUAAUCUGAAACGGAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288635.1	ncRNA:24   GGAGGCAAAGUCUAAUAUUCUACA   1   ||||||||||||=||||||||||| targets:372   CCUCCGUUUCAGGUUAUAAGAUGU   395 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090055J05, full insert sequence	NA	coding protein	psRNATarget
AK288928.1	ncRNA:24   GGAGGCAAAGUCUAAUAUUCUACA   1   ||||||||||||=||||||||||| targets:1192   CCUCCGUUUCAGGUUAUAAGAUGU   1215 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090082F16, full insert sequence	NA	coding protein	psRNATarget
CT833794.1	ncRNA:24   GGAGGCAAAGUCUAAUAUUCUACA   1   ||||=|||||||=||||||||||| targets:407   CCUCUGUUUCAGGUUAUAAGAUGU   430 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA042F13, full insert sequence	NA	coding protein	psRNATarget
AK243195.1	ncRNA:24   GGAGGCAAAGUCUAAUAUUCUACA   1   *|||||||||||=||||||||||* targets:1178   GCUCCGUUUCAGGUUAUAAGAUGG   1201 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100040A04, full insert sequence	NA	coding protein	psRNATarget
XM_015774077.1	ncRNA:24   GGAGGCAAAGUCUAAUAUUCUACA   1   *|||||||||||=||||||||||* targets:1188   GCUCCGUUUCAGGUUAUAAGAUGG   1211 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4327747), mRNA	uncharacterized protein At4g15970(LOC4327747)	coding protein	psRNATarget
XM_015777042.1	ncRNA:24   GGAGGCAAAGUCUAAUAUUCUACA   1   =|||=|||||||||||||||||*| targets:1837   UCUCUGUUUCAGAUUAUAAGAUAU   1860 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group casein kinase I isoform delta-B (LOC4334396), transcript variant X4, mRNA	casein kinase I isoform delta-B(LOC4334396)	coding protein	psRNATarget
XM_015777041.1	ncRNA:24   GGAGGCAAAGUCUAAUAUUCUACA   1   =|||=|||||||||||||||||*| targets:2674   UCUCUGUUUCAGAUUAUAAGAUAU   2697 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group casein kinase I isoform delta-B (LOC4334396), transcript variant X3, mRNA	casein kinase I isoform delta-B(LOC4334396)	coding protein	psRNATarget
XM_015777039.1	ncRNA:24   GGAGGCAAAGUCUAAUAUUCUACA   1   =|||=|||||||||||||||||*| targets:2684   UCUCUGUUUCAGAUUAUAAGAUAU   2707 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group casein kinase I isoform delta-B (LOC4334396), transcript variant X1, mRNA	casein kinase I isoform delta-B(LOC4334396)	coding protein	psRNATarget
AK121620.1	ncRNA:24   GGAGGCAAAGUCUAAUAUUCUACA   1   =|||=|||||||||||||||||*| targets:2688   UCUCUGUUUCAGAUUAUAAGAUAU   2711 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033044P16, full insert sequence	NA	coding protein	psRNATarget
AB753042.1	ncRNA:24   GGAGGCAAAGUCUAAUAUUCUACA   1   =|||=|||||||||||||||||*| targets:2689   UCUCUGUUUCAGAUUAUAAGAUAU   2712 Target Full Sequence	1.5	Oryza sativa Japonica Group Hd16 mRNA for heading date 16, complete cds, cultivar: Koshihikari	NA	coding protein	psRNATarget
AB753041.1	ncRNA:24   GGAGGCAAAGUCUAAUAUUCUACA   1   =|||=|||||||||||||||||*| targets:2689   UCUCUGUUUCAGAUUAUAAGAUAU   2712 Target Full Sequence	1.5	Oryza sativa Japonica Group Hd16 mRNA for heading date 16, complete cds, cultivar: Nipponbare	NA	coding protein	psRNATarget
XM_015777040.1	ncRNA:24   GGAGGCAAAGUCUAAUAUUCUACA   1   =|||=|||||||||||||||||*| targets:2904   UCUCUGUUUCAGAUUAUAAGAUAU   2927 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group casein kinase I isoform delta-B (LOC4334396), transcript variant X2, mRNA	casein kinase I isoform delta-B(LOC4334396)	coding protein	psRNATarget