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BaseInfo

ncRNA ID	novel_osa_miR2650
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:8619421-8619474 [-]
Reference genome	IRGSP-1.0
Source	SRR1849781
Length	23
Mature sequence(if miRNA)	1 - AUAUCUAGAUUCGUUGUAUUAGG - 23
Stem-loop(if miRNA)	--                  C GA  U   UAGUACAGCGAAUCUAGA A  GG A   |||||||||||||||||| |  ||   AUUAUGUUGCUUAGAUCU U  CU U GG                  A AA  G
Stem-loop sequence	UAGUACAGCGAAUCUAGACAGAGGUAUGUCAAUAUCUAGAUUCGUUGUAUUAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403967.1	ncRNA:23   GGAUUAUGUUGCUUAGAUCUAUA   1   ||||=|||||=|||||||||||| targets:28   CCUAGUACAAUGAAUCUAGAUAU   50 Target Full Sequence	2.5	Sequence 2092 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236097.1	ncRNA:23   GGAUUAUGUUGCUUAGAUCUAUA   1   ||||=|||||=|||||||||||| targets:28   CCUAGUACAAUGAAUCUAGAUAU   50 Target Full Sequence	2.5	Sequence 2092 from Patent EP2985353	NA	coding protein	psRNATarget
JB164428.1	ncRNA:23   GGAUUAUGUUGCUUAGAUCUAUA   1   ||||=|||||=|||||||||||| targets:28   CCUAGUACAAUGAAUCUAGAUAU   50 Target Full Sequence	2.5	Sequence 2092 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236287.1	ncRNA:23   GGAUUAUGUUGCUUAGAUCUAUA   1   =|||||||||||||||||||*|| targets:23   UCUAAUACAACGAAUCUAGACAU   45 Target Full Sequence	1.5	Sequence 2282 from Patent EP2985353	NA	coding protein	psRNATarget
JB164618.1	ncRNA:23   GGAUUAUGUUGCUUAGAUCUAUA   1   =|||||||||||||||||||*|| targets:23   UCUAAUACAACGAAUCUAGACAU   45 Target Full Sequence	1.5	Sequence 2282 from Patent EP2559767	NA	coding protein	psRNATarget
HI404157.1	ncRNA:23   GGAUUAUGUUGCUUAGAUCUAUA   1   =|||||||||||||||||||*|| targets:23   UCUAAUACAACGAAUCUAGACAU   45 Target Full Sequence	1.5	Sequence 2282 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015758227.1	ncRNA:23   GGAUUAUGUUGCUUAGAUCUAUA   1   =|||||||*|||||||||||||| targets:1708   UCUAAUACUACGAAUCUAGAUAU   1730 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272131 (LOC9272131), transcript variant X4, mRNA	uncharacterized LOC9272131(Os01g0200175)	coding protein	psRNATarget
XM_015758220.1	ncRNA:23   GGAUUAUGUUGCUUAGAUCUAUA   1   =|||||||*|||||||||||||| targets:2085   UCUAAUACUACGAAUCUAGAUAU   2107 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272131 (LOC9272131), transcript variant X3, mRNA	uncharacterized LOC9272131(Os01g0200175)	coding protein	psRNATarget
XM_015758212.1	ncRNA:23   GGAUUAUGUUGCUUAGAUCUAUA   1   =|||||||*|||||||||||||| targets:2160   UCUAAUACUACGAAUCUAGAUAU   2182 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272131 (LOC9272131), transcript variant X2, mRNA	uncharacterized LOC9272131(Os01g0200175)	coding protein	psRNATarget
XM_015758208.1	ncRNA:23   GGAUUAUGUUGCUUAGAUCUAUA   1   =|||||||*|||||||||||||| targets:2458   UCUAAUACUACGAAUCUAGAUAU   2480 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272131 (LOC9272131), transcript variant X1, mRNA	uncharacterized LOC9272131(Os01g0200175)	coding protein	psRNATarget
AK064924.1	ncRNA:23   GGAUUAUGUUGCUUAGAUCUAUA   1   |=||||||*||||||||=||||| targets:2017   CUUAAUACUACGAAUCUGGAUAU   2039 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013000N15, full insert sequence	NA	coding protein	psRNATarget
AK119748.1	ncRNA:23   GGAUUAUGUUGCUUAGAUCUAUA   1   |=||||||*||||||||=||||| targets:2194   CUUAAUACUACGAAUCUGGAUAU   2216 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-165-F11, full insert sequence	NA	coding protein	psRNATarget
XM_015785327.1	ncRNA:23   GGAUUAUGUUGCUUAGAUCUAUA   1   |=||||||*||||||||=||||| targets:2250   CUUAAUACUACGAAUCUGGAUAU   2272 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phosphoinositide phospholipase C 2 (LOC4337686), mRNA	phosphoinositide phospholipase C 2(LOC4337686)	coding protein	psRNATarget
AK072141.1	ncRNA:23   GGAUUAUGUUGCUUAGAUCUAUA   1   |=||||||*||||||||=||||| targets:2817   CUUAAUACUACGAAUCUGGAUAU   2839 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013122I07, full insert sequence	NA	coding protein	psRNATarget
AK109615.1	ncRNA:23   GGAUUAUGUUGCUUAGAUCUAUA   1   *|||=|||*|||||||||||||* targets:1517   GCUAGUACUACGAAUCUAGAUAG   1539 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-137-G12, full insert sequence	NA	coding protein	psRNATarget
XM_015760168.1	ncRNA:23   GGAUUAUGUUGCUUAGAUCUAUA   1   *|||=|||*|||||||||||||* targets:1517   GCUAGUACUACGAAUCUAGAUAG   1539 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350559 (LOC4350559), mRNA	uncharacterized LOC4350559(LOC4350559)	coding protein	psRNATarget