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BaseInfo

ncRNA ID novel_osa_miR2644
Species Oryza sativa
Class miRNA
Genome position Chr6:21949402-21949502 [-]
Reference genome IRGSP-1.0
Source SRR1298758;SRR1298766;SRR1300837
Length 24
Mature sequence(if miRNA) 1 - UUUAGGCUUAAUAAAUUCGUCUCG - 24
Stem-loop(if miRNA) --        CUU          UUGUG    GAU   A   UGU   GCUA
  AGACGAAU   UUAAGCCUAA     CCAU   UUG CAA   GGU    C
  ||||||||   ||||||||||     ||||   ||| |||   |||
  UCUGCUUA   AAUUCGGAUU     GGUA   AAU GUU   UCA    A
GC        AAU          UAUUA    -AU   C   --U   AAUU
Stem-loop sequence AGACGAAUCUUUUAAGCCUAAUUGUGCCAUGAUUUGACAAUGUGGUGCUACAUUAAACUUUUGCUAAUAAUGGAUUAUUUAGGCUUAAUAAAUUCGUCUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB164964.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||||||||||*
targets:9   CGAGACGAAUUUAUUAAGCCUAAU   32

1.0 Sequence 2628 from Patent EP2559767 NA coding protein psRNATarget
HI404503.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||||||||||*
targets:9   CGAGACGAAUUUAUUAAGCCUAAU   32

1.0 Sequence 2628 from Patent EP2074227 NA coding protein psRNATarget
LQ236633.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||||||||||*
targets:9   CGAGACGAAUUUAUUAAGCCUAAU   32

1.0 Sequence 2628 from Patent EP2985353 NA coding protein psRNATarget
AK105537.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||||||||||*
targets:605   CGAGACGAAUUUAUUAAGCCUAAC   628

1.0 Oryza sativa Japonica Group cDNA clone:001-127-H05, full insert sequence NA coding protein psRNATarget
CT837715.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||||||||||*
targets:1210   CGAGACGAAUUUAUUAAGCCUAAU   1233

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI232H20, full insert sequence NA coding protein psRNATarget
AK287428.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||||||||||*
targets:1798   CGAGACGAAUUUAUUAAGCCUAAU   1821

1.0 Oryza sativa Japonica Group cDNA, clone: J043010G23, full insert sequence NA coding protein psRNATarget
CT837714.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||||||||||*
targets:1802   CGAGACGAAUUUAUUAAGCCUAAU   1825

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI226D21, full insert sequence NA coding protein psRNATarget
AK072341.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||||||||||*
targets:2315   CGAGACGAAUUUAUUAAGCCUAAU   2338

1.0 Oryza sativa Japonica Group cDNA clone:J023052M08, full insert sequence NA coding protein psRNATarget
AK288948.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||||||||||*
targets:447   CGAGACGAAUUUAUUAAGCCUAAU   470

1.0 Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence NA coding protein psRNATarget
AK120234.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||||||||||*
targets:2425   CGAGACGAAUUUAUUAAGCCUAAU   2448

1.0 Oryza sativa Japonica Group cDNA clone:J013043L17, full insert sequence NA coding protein psRNATarget
AK288942.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||||||||||*
targets:3289   CGAGACGAAUUUAUUAAGCCUAAU   3312

1.0 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence NA coding protein psRNATarget
AK287702.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||||||||||*
targets:1275   CGAGACGAAUUUAUUAAGCCUAAU   1298

1.0 Oryza sativa Japonica Group cDNA, clone: J065131D02, full insert sequence NA coding protein psRNATarget
AK289087.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||||||||||*
targets:37   CGAGACGAAUUUAUUAAGCCUAAU   60

1.0 Oryza sativa Japonica Group cDNA, clone: J090095K03, full insert sequence NA coding protein psRNATarget
CT837948.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||=||||||||||||||||||||*
targets:514   CGGGACGAAUUUAUUAAGCCUAAU   537

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008C05, full insert sequence NA coding protein psRNATarget
AK287842.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  =||||||||||||||||||||||*
targets:1017   UGAGACGAAUUUAUUAAGCCUAAU   1040

1.0 Oryza sativa Japonica Group cDNA, clone: J065194J09, full insert sequence NA coding protein psRNATarget
XM_015775081.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  =||||||||||||||||||||||*
targets:1038   UGAGACGAAUUUAUUAAGCCUAAU   1061

1.0 PREDICTED: Oryza sativa Japonica Group methylesterase 3 (LOC4324570), mRNA methylesterase 3(LOC4324570) coding protein psRNATarget
XM_015789194.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||||||||=||||||||||||||*
targets:2138   CGAGACGAGUUUAUUAAGCCUAAU   2161

2.0 PREDICTED: Oryza sativa Japonica Group AUGMIN subunit 3 (LOC4342590), mRNA AUGMIN subunit 3(LOC4342590) coding protein psRNATarget
AK070572.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||||||||=||||||||||||||*
targets:2133   CGAGACGAGUUUAUUAAGCCUAAU   2156

2.0 Oryza sativa Japonica Group cDNA clone:J023055P17, full insert sequence NA coding protein psRNATarget
AK100594.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||=|||||||||||||||||*
targets:2602   CGAGAUGAAUUUAUUAAGCCUAAU   2625

2.0 Oryza sativa Japonica Group cDNA clone:J023106M03, full insert sequence NA coding protein psRNATarget
AK072161.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||||||||||||||||||=||||*
targets:1034   CGAGACGAAUUUAUUAAGUCUAAU   1057

2.5 Oryza sativa Japonica Group cDNA clone:J013132P06, full insert sequence NA coding protein psRNATarget
AK288806.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||=|||||||||||||||*
targets:1332   CGAGACGGAUUUAUUAAGCCUAAU   1355

2.0 Oryza sativa Japonica Group cDNA, clone: J090071K16, full insert sequence NA coding protein psRNATarget
AK100778.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  =||||||||||||||||||||||*
targets:1514   UGAGACGAAUUUAUUAAGCCUAAU   1537

1.0 Oryza sativa Japonica Group cDNA clone:J023120F15, full insert sequence NA coding protein psRNATarget
AK288772.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||||||||||||||||||=||||*
targets:104   CGAGACGAAUUUAUUAAGUCUAAU   127

2.5 Oryza sativa Japonica Group cDNA, clone: J090068C09, full insert sequence NA coding protein psRNATarget
AK288279.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||=|||||||||||||||||*
targets:5616   CGAGAUGAAUUUAUUAAGCCUAAU   5639

2.0 Oryza sativa Japonica Group cDNA, clone: J090017N13, full insert sequence NA coding protein psRNATarget
AK288164.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  =||||||||||||||=|||||||*
targets:1063   UGAGACGAAUUUAUUGAGCCUAAU   1086

2.5 Oryza sativa Japonica Group cDNA, clone: J090002E02, full insert sequence NA coding protein psRNATarget
AK288202.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  =||||||||||||||=|||||||*
targets:1063   UGAGACGAAUUUAUUGAGCCUAAU   1086

2.5 Oryza sativa Japonica Group cDNA, clone: J090008J03, full insert sequence NA coding protein psRNATarget
AK288230.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||||==|||||||||||||||||*
targets:5842   CGAGGUGAAUUUAUUAAGCCUAAU   5865

2.0 Oryza sativa Japonica Group cDNA, clone: J090012M14, full insert sequence NA coding protein psRNATarget
LQ235961.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||*|||||||||*
targets:9   CGAGACGAAUUUACUAAGCCUAAU   32

2.5 Sequence 1956 from Patent EP2985353 NA coding protein psRNATarget
JB164292.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||*|||||||||*
targets:9   CGAGACGAAUUUACUAAGCCUAAU   32

2.5 Sequence 1956 from Patent EP2559767 NA coding protein psRNATarget
HI403831.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||*|||||||||*
targets:9   CGAGACGAAUUUACUAAGCCUAAU   32

2.5 Sequence 1956 from Patent EP2074227 NA coding protein psRNATarget
AK107289.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  *||||=|||||||||||||||||*
targets:1983   AGAGAUGAAUUUAUUAAGCCUAAU   2006

2.0 Oryza sativa Japonica Group cDNA clone:002-126-B09, full insert sequence NA coding protein psRNATarget
AK067512.1
ncRNA:24   GC--UCUGCUUAAAUAAUUCGGAUUU   1
  ||--|||||||||||||||||||||*
targets:1104   CGCAAGACGAAUUUAUUAAGCCUAAU   1129

1.0 Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence NA coding protein psRNATarget
AK103177.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||||||||||||*||||||||||*
targets:1236   CGAGACGAAUUUUUUAAGCCUAAU   1259

2.5 Oryza sativa Japonica Group cDNA clone:J033121H17, full insert sequence NA coding protein psRNATarget
XM_015788312.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||||||||||||*||||||||||*
targets:1592   CGAGACGAAUUUUUUAAGCCUAAU   1615

2.5 PREDICTED: Oryza sativa Japonica Group serine/arginine-rich splicing factor SR45a (LOC4342102), transcript variant X1, mRNA serine/arginine-rich splicing factor SR45a(LOC4342102) coding protein psRNATarget
AK287827.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||||||||||||*||||||||||*
targets:1994   CGAGACGAAUUUUUUAAGCCUAAU   2017

2.5 Oryza sativa Japonica Group cDNA, clone: J065185G19, full insert sequence NA coding protein psRNATarget
AK073850.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||||||||||||*||||||||||*
targets:1575   CGAGACGAAUUUUUUAAGCCUAAU   1598

2.5 Oryza sativa Japonica Group cDNA clone:J033073F11, full insert sequence NA coding protein psRNATarget
AK102878.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||||||||||*||||||||||||*
targets:2050   CGAGACGAAUCUAUUAAGCCUAAU   2073

2.0 Oryza sativa Japonica Group cDNA clone:J033112G02, full insert sequence NA coding protein psRNATarget
AK103318.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||*|||||||||||*
targets:1072   CGAGACGAAUUAAUUAAGCCUAAU   1095

2.5 Oryza sativa Japonica Group cDNA clone:J033125I08, full insert sequence NA coding protein psRNATarget
XM_015785585.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||||||||||*||||||||||||*
targets:2121   CGAGACGAAUCUAUUAAGCCUAAU   2144

2.0 PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X2, mRNA external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876) coding protein psRNATarget
AK101107.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||||||*||||||||||||||||*
targets:1770   CGAGACAAAUUUAUUAAGCCUAAU   1793

2.0 Oryza sativa Japonica Group cDNA clone:J033025D23, full insert sequence NA coding protein psRNATarget
XM_015785584.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||||||||||*||||||||||||*
targets:2254   CGAGACGAAUCUAUUAAGCCUAAU   2277

2.0 PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X1, mRNA external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876) coding protein psRNATarget
AK069221.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||*|||||||||||||||||||*
targets:522   CGAUACGAAUUUAUUAAGCCUAAU   545

1.0 Oryza sativa Japonica Group cDNA clone:J023018E21, full insert sequence NA coding protein psRNATarget
AK103572.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||||||||||*||||||||||||*
targets:2732   CGAGACGAAUCUAUUAAGCCUAAU   2755

2.0 Oryza sativa Japonica Group cDNA clone:J033132N13, full insert sequence NA coding protein psRNATarget
AK068143.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |*|||||||||||||||||||||*
targets:1149   CUAGACGAAUUUAUUAAGCCUAAU   1172

1.0 Oryza sativa Japonica Group cDNA clone:J013134C06, full insert sequence NA coding protein psRNATarget
AK120109.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||*|||||||*
targets:1878   CGAGACGAAUUUAUUCAGCCUAAU   1901

2.5 Oryza sativa Japonica Group cDNA clone:J013023O17, full insert sequence NA coding protein psRNATarget
AK288995.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||||||*|||*
targets:1333   CGAGACGAAUUUAUUAAGCAUAAU   1356

2.5 Oryza sativa Japonica Group cDNA, clone: J090088A20, full insert sequence NA coding protein psRNATarget
XM_015773694.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||||*|||||*
targets:761   CGAGACGAAUUUAUUAAACCUAAU   784

2.5 PREDICTED: Oryza sativa Japonica Group putative ubiquitin-like-specific protease 1B (LOC9268223), transcript variant X2, mRNA putative ubiquitin-like-specific protease 1B(LOC9268223) coding protein psRNATarget
AK065982.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||||||||||*||||||||||||*
targets:2793   CGAGACGAAUCUAUUAAGCCUAAU   2816

2.0 Oryza sativa Japonica Group cDNA clone:J013045J05, full insert sequence NA coding protein psRNATarget
AK099802.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||||*|||||*
targets:767   CGAGACGAAUUUAUUAAACCUAAU   790

2.5 Oryza sativa Japonica Group cDNA clone:J013098A22, full insert sequence NA coding protein psRNATarget
XM_015791223.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||*|||||||||||||||||||*
targets:1680   CGAUACGAAUUUAUUAAGCCUAAU   1703

1.0 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g01970 (LOC4344187), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At1g01970(LOC4344187) coding protein psRNATarget
AK289079.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||||||*||||||||||||||||*
targets:582   CGAGACAAAUUUAUUAAGCCUAAU   605

2.0 Oryza sativa Japonica Group cDNA, clone: J090095C15, full insert sequence NA coding protein psRNATarget
AK067087.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||||||||||||*|||||||*
targets:1877   CGAGACGAAUUUAUUCAGCCUAAU   1900

2.5 Oryza sativa Japonica Group cDNA clone:J013095A19, full insert sequence NA coding protein psRNATarget
AK288241.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  ||||||||||||*||||||||||*
targets:590   CGAGACGAAUUUUUUAAGCCUAAU   613

2.5 Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence NA coding protein psRNATarget
AK288647.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  =|||==|||||||||||||||||*
targets:2013   UGAGGUGAAUUUAUUAAGCCUAAU   2036

2.0 Oryza sativa Japonica Group cDNA, clone: J090056K16, full insert sequence NA coding protein psRNATarget
AK108855.1
ncRNA:24   GC--UCUGCUUAAAUAAUUCGGAUUU   1
  ||--|||||=|||||||||||||||*
targets:2324   CGCAAGACGGAUUUAUUAAGCCUAAU   2349

2.0 Oryza sativa Japonica Group cDNA clone:002-152-B01, full insert sequence NA coding protein psRNATarget
AK242584.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  =||*|||||||||||||||||||*
targets:2478   UGACACGAAUUUAUUAAGCCUAAU   2501

1.0 Oryza sativa Japonica Group cDNA, clone: J090010K24, full insert sequence NA coding protein psRNATarget
AK102033.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||||=||||*||||||||||||*
targets:348   CGAGAUGAAUCUAUUAAGCCUAAU   371

3.0 Oryza sativa Japonica Group cDNA clone:J033081B10, full insert sequence NA coding protein psRNATarget
AK288660.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  =*||||*|||||||||||||||||
targets:2339   UAAGACAAAUUUAUUAAGCCUAAA   2362

1.0 Oryza sativa Japonica Group cDNA, clone: J090057N05, full insert sequence NA coding protein psRNATarget
XM_015781196.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  =|||=|||||||*||||||||||*
targets:2070   UGAGGCGAAUUUUUUAAGCCUAAU   2093

2.5 PREDICTED: Oryza sativa Japonica Group GATA transcription factor 6 (LOC4336532), mRNA GATA transcription factor 6(LOC4336532) coding protein psRNATarget
XM_015769710.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  =|||||*=|||||||||||||||*
targets:2856   UGAGACAGAUUUAUUAAGCCUAAU   2879

3.0 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X2, mRNA disease resistance protein RPP13(LOC4328990) coding protein psRNATarget
XM_015769709.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  =|||||*=|||||||||||||||*
targets:2990   UGAGACAGAUUUAUUAAGCCUAAU   3013

3.0 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X1, mRNA disease resistance protein RPP13(LOC4328990) coding protein psRNATarget
AK288422.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  =|||||||||*|*|||||||||||
targets:621   UGAGACGAAUCUUUUAAGCCUAAA   644

2.5 Oryza sativa Japonica Group cDNA, clone: J090032F09, full insert sequence NA coding protein psRNATarget
AK288540.1
ncRNA:24   GCUCUGCUUAAAUAAUUCGGAUUU   1
  |||*||*||||||||||||||||*
targets:1655   CGAUACAAAUUUAUUAAGCCUAAU   1678

2.0 Oryza sativa Japonica Group cDNA, clone: J090045N03, full insert sequence NA coding protein psRNATarget
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