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BaseInfo

ncRNA ID	novel_osa_miR2642
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:28721498-28721552 [+]
Reference genome	IRGSP-1.0
Source	SRR1849781
Length	21
Mature sequence(if miRNA)	1 - UUCUAUUACUACGAAUCUGGA - 21
Stem-loop(if miRNA)	--     U                UGA   UUCUA UACUACGAAUCUGGAC   G   ||||| ||||||||||||||||   G   AAGAU AUGAUGCUUAGAUUUG   G GU     C                UUU
Stem-loop sequence	UUCUAUUACUACGAAUCUGGACUGAGGGUUUGUUUAGAUUCGUAGUACUAGAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403548.1	ncRNA:21   AGGUCUAAGCAUCAUUAUCUU   1   |||||||||||||||*||||| targets:43   UCCAGAUUCGUAGUAUUAGAA   63 Target Full Sequence	1.5	Sequence 1673 from Patent EP2074227	NA	coding protein	psRNATarget
JB164009.1	ncRNA:21   AGGUCUAAGCAUCAUUAUCUU   1   |||||||||||||||*||||| targets:43   UCCAGAUUCGUAGUAUUAGAA   63 Target Full Sequence	1.5	Sequence 1673 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235678.1	ncRNA:21   AGGUCUAAGCAUCAUUAUCUU   1   |||||||||||||||*||||| targets:43   UCCAGAUUCGUAGUAUUAGAA   63 Target Full Sequence	1.5	Sequence 1673 from Patent EP2985353	NA	coding protein	psRNATarget
AK288418.1	ncRNA:21   AGGUCUAAGCAUCAUUAUCUU   1   |||||||||||||||*||||| targets:778   UCCAGAUUCGUAGUAUUAGAA   798 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090031L18, full insert sequence	NA	coding protein	psRNATarget
XM_015761638.1	ncRNA:21   AGGUCUAAGCAUCAUUAUCUU   1   ||||*||||||||||||||=| targets:3943   UCCAAAUUCGUAGUAAUAGGA   3963 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107278048), mRNA	putative receptor protein kinase ZmPK1(LOC107278048)	coding protein	psRNATarget
AK288873.1	ncRNA:21   AGGUCUAAGCAUCAUUAUCUU   1   |||||||||*||||||||||* targets:2466   UCCAGAUUCAUAGUAAUAGAU   2486 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078I24, full insert sequence	NA	coding protein	psRNATarget
AK107145.1	ncRNA:21   AGGUCUAAGCAUCAUUAUCUU   1   *=|||||||||||||*||||| targets:1251   AUCAGAUUCGUAGUACUAGAA   1271 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-124-D07, full insert sequence	NA	coding protein	psRNATarget
XM_015782471.1	ncRNA:21   AGGUCUAAGCAUCAUUAUCUU   1   *=|||||||||||||*||||| targets:1291   AUCAGAUUCGUAGUACUAGAA   1311 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339433 (LOC4339433), mRNA	uncharacterized LOC4339433(LOC4339433)	coding protein	psRNATarget
CT829763.1	ncRNA:21   AGGUCUAAGCAUCAUUAUCUU   1   *||||||||||||||*||||* targets:1006   CCCAGAUUCGUAGUACUAGAU   1026 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105M10, full insert sequence	NA	coding protein	psRNATarget