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BaseInfo

ncRNA ID novel_osa_miR2640
Species Oryza sativa
Class miRNA
Genome position Chr10:20286736-20286815 [+]
Reference genome IRGSP-1.0
Source SRR1849781
Length 24
Mature sequence(if miRNA) 57 - AAUGAUCGGAAAUGAUUUGGUACC - 80
Stem-loop(if miRNA) --                             A AAU  CC
  UACCAAAUCGUUUCCGAUCGUUGGAUCUA C   GC  A
  ||||||||||||||||||||||||||||| |   ||  U
  AUGGUUUAGUAAAGGCUAGUAACCUAGAU G   CG  C
CC                             C -AC  UC
Stem-loop sequence UACCAAAUCGUUUCCGAUCGUUGGAUCUAACAAUGCCCAUCCUGCCAGCUAGAUCCAAUGAUCGGAAAUGAUUUGGUACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ236460.1
ncRNA:22   AUGGUUUAGUAAAGGCUAGUAA   1
  |||=|||||||||||||||=||
targets:1   UACUAAAUCAUUUCCGAUCGUU   22

2.5 Sequence 2455 from Patent EP2985353 NA coding protein psRNATarget
HI404330.1
ncRNA:22   AUGGUUUAGUAAAGGCUAGUAA   1
  |||=|||||||||||||||=||
targets:1   UACUAAAUCAUUUCCGAUCGUU   22

2.5 Sequence 2455 from Patent EP2074227 NA coding protein psRNATarget
JB164791.1
ncRNA:22   AUGGUUUAGUAAAGGCUAGUAA   1
  |||=|||||||||||||||=||
targets:1   UACUAAAUCAUUUCCGAUCGUU   22

2.5 Sequence 2455 from Patent EP2559767 NA coding protein psRNATarget