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BaseInfo

ncRNA ID	novel_osa_miR2636
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:26510207-26510381 [+]
Reference genome	IRGSP-1.0
Source	SRR1849781
Length	23
Mature sequence(if miRNA)	153 - UCAAAAGUUGGACACGAAAACCC - 175
Stem-loop(if miRNA)	--    C          G                  A     ----------------UUUUUU  UAAUUAGUAUUUUCAUUGUUGUUAGAUGA   GUUU UGUGUCCAAC UUUGACUGUCUGUCUUAU UGAAA                      UA                             U   |||| |||||||||| |||||||||||||||||| |||||                      ||                             A   CAAA GCACAGGUUG AAACUGGCAGGCAGAAUA ACUUU                      CU                             A CC    A          A                  A     UUUAAUACUUUUUUUAAUUUUU  GUUCAGUGCGUAUUUCAUAAUUAGUACAA
Stem-loop sequence	GUUUCUGUGUCCAACGUUUGACUGUCUGUCUUAUAUGAAAUUUUUUUAUAAUUAGUAUUUUCAUUGUUGUUAGAUGAUAAAACAUGAUUAAUACUUUAUGCGUGACUUGUCUUUUUAAUUUUUUUCAUAAUUUUUUCAAAUAAGACGGACGGUCAAAAGUUGGACACGAAAACCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015759983.1	ncRNA:23   CCCAAAAGCACAGGUUGAAAACU   1   ||||||*||||||||||*||||| targets:3512   GGGUUUCCGUGUCCAACGUUUGA   3534 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270101 (LOC9270101), transcript variant X4, mRNA	uncharacterized LOC9270101(LOC9270101)	coding protein	psRNATarget
CT832631.1	ncRNA:23   CCCAAAAGCACAGGUUGAAAACU   1   ||||||*||||||||||*||||| targets:335   GGGUUUCCGUGUCCAACGUUUGA   357 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021A12, full insert sequence	NA	coding protein	psRNATarget
CT832630.1	ncRNA:23   CCCAAAAGCACAGGUUGAAAACU   1   ||||||*||||||||||*||||| targets:335   GGGUUUCCGUGUCCAACGUUUGA   357 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020B12, full insert sequence	NA	coding protein	psRNATarget
XM_015792475.1	ncRNA:23   CCCAAAAGCACAGGUUGAAAACU   1   |*||||*||||||||||*||||| targets:2601   GAGUUUCCGUGUCCAACGUUUGA   2623 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X4, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
XM_015792473.1	ncRNA:23   CCCAAAAGCACAGGUUGAAAACU   1   |*||||*||||||||||*||||| targets:2587   GAGUUUCCGUGUCCAACGUUUGA   2609 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X2, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
AK109737.1	ncRNA:23   CCCAAAAGCACAGGUUGAAAACU   1   |*||||*||||||||||*||||| targets:1973   GAGUUUCCGUGUCCAACAUUUGA   1995 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-146-C11, full insert sequence	NA	coding protein	psRNATarget
AK288529.1	ncRNA:23   CCCAAAAGCACAGGUUGAAAACU   1   *||*||*||||||||||*||||| targets:67   UGGCUUCCGUGUCCAACGUUUGA   89 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090044M17, full insert sequence	NA	coding protein	psRNATarget
AK106724.1	ncRNA:23   CCCAAAAGCACAGGUUGAAAACU   1   *|*|||*||||||||||*||||| targets:662   UGAUUUCCGUGUCCAACAUUUGA   684 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-114-G11, full insert sequence	NA	coding protein	psRNATarget
CT827991.1	ncRNA:23   CCCAAAAGCACAGGUUGAAAACU   1   *|*|||*||||||||||*||||| targets:649   UGAUUUCCGUGUCCAACAUUUGA   671 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H03, full insert sequence	NA	coding protein	psRNATarget
XM_015772621.1	ncRNA:23   CCCAAAAGCACAGGUUGAAAACU   1   ***|||*||||||||||*||||| targets:399   UAAUUUCCGUGUCCAACGUUUGA   421 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4332894 (LOC4332894), mRNA	uncharacterized LOC4332894(LOC4332894)	coding protein	psRNATarget