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BaseInfo

ncRNA ID	novel_osa_miR2635
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:5101637-5101702 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1556014
Length	24
Mature sequence(if miRNA)	43 - CCUCCCCUCCCAUCGGAUCUGGCA - 66
Stem-loop(if miRNA)	--       UA    -   A    ---GC  C  C   CCGGAUC  GUGG AGG GAGG     GC GC A   |||||||  |||| ||| ||||     || ||   GGUCUAG  UACC UCC CUCC     CG CG C AC       GC    C   C    AUAAC  U  U
Stem-loop sequence	CCGGAUCUAGUGGAGGAGAGGGCGCCGCCACUGCUGCCAAUACCUCCCCUCCCAUCGGAUCUGGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT828819.1	ncRNA:24   ACGGUCUAGGCUACCCUCCCCUCC   1   *||||||||=|=|||||||||||| targets:187   CGCCAGAUCUGGUGGGAGGGGAGG   210 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA246F13, full insert sequence	NA	coding protein	psRNATarget
AK066660.1	ncRNA:24   ACGGUCUAGGCUACCCUCCCCUCC   1   *||||||||=|=|||||||||||| targets:217   CGCCAGAUCUGGUGGGAGGGGAGG   240 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013072E16, full insert sequence	NA	coding protein	psRNATarget
AK099011.1	ncRNA:24   ACGGUCUAGGCUACCCUCCCCUCC   1   *||||||||=|=|||||||||||| targets:160   CGCCAGAUCUGGUGGGAGGGGAGG   183 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013120H07, full insert sequence	NA	coding protein	psRNATarget
XM_015773629.1	ncRNA:24   ACGGUCUAGGCUACCCUCCCCUCC   1   ||||||||||*=|||||||||||| targets:1123   UGCCAGAUCCAGUGGGAGGGGAGG   1146 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At1g28650 (LOC4332910), mRNA	GDSL esterase/lipase At1g28650(LOC4332910)	coding protein	psRNATarget
AK288922.1	ncRNA:24   ACGGUCUAGGCUACCCUCCCCUCC   1   ||||||||||*=|||||||||||| targets:1318   UGCCAGAUCCAGUGGGAGGGGAGG   1341 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090081M23, full insert sequence	NA	coding protein	psRNATarget
XM_015773630.1	ncRNA:24   ACGGUCUAGGCUACCCUCCCCUCC   1   ||||||||||*=|||||||||||| targets:1843   UGCCAGAUCCAGUGGGAGGGGAGG   1866 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At1g28650-like (LOC107278316), mRNA	GDSL esterase/lipase At1g28650-like(LOC107278316)	coding protein	psRNATarget
AK242361.1	ncRNA:24   ACGGUCUAGGCUACCCUCCCCUCC   1   **|||||||||=|||||||||||| targets:131   CUCCAGAUCCGGUGGGAGGGGAGG   154 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J080030E24, full insert sequence	NA	coding protein	psRNATarget
AK107715.1	ncRNA:24   ACGGUCUAGGCUACCCUCCCCUCC   1   *|=|=||||||=|||||||||||| targets:475   CGUCGGAUCCGGUGGGAGGGGAGG   498 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-132-E02, full insert sequence	NA	coding protein	psRNATarget
AK288826.1	ncRNA:24   ACGGUCUAGGCUACCCUCCCCUCC   1   *|||||*||||=|||||||||||| targets:4943   CGCCAGUUCCGGUGGGAGGGGAGG   4966 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090073I23, full insert sequence	NA	coding protein	psRNATarget
AK109768.1	ncRNA:24   ACGGUCUAGGCUACCCUCCCCUCC   1   *|*||||||||=|||||||||||| targets:971   CGACAGAUCCGGUGGGAGGGGAGG   994 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-147-A03, full insert sequence	NA	coding protein	psRNATarget
AK240964.1	ncRNA:24   ACGGUCUAGGCUACCCUCCCCUCC   1   **||=|||=|||*||||||||||| targets:131   CACCGGAUUCGACGGGAGGGGAGG   154 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065046B17, full insert sequence	NA	coding protein	psRNATarget
AK107919.1	ncRNA:24   ACGGUCUAGGCUACCCUCCCCUCC   1   **|==|||*=|||||||||||||| targets:415   CACUGGAUGUGAUGGGAGGGGAGG   438 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-134-H02, full insert sequence	NA	coding protein	psRNATarget