ncRNA ID | novel_osa_miR2633 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr5:19224566-19224740 [-] |
Reference genome | IRGSP-1.0 |
Source | SRR1849781 |
Length | 20 |
Mature sequence(if miRNA) | 1 - AACGUUGUAAGGAAAAACUU - 20 |
Stem-loop(if miRNA) |
--   G  G                               -         -    UAUUAAUUAUUUUAU     A    CUU    AU   GUU UU CUUGUAACGUUUGAUCACUCGUCUUAUUCAA UUUUUUUUG AAAU               UUAUG CUUA   UAUU  C   ||| || ||||||||||||||||||||||||||||||| ||||||||| ||||               ||||| ||||   ||||   CAA AA GAAUGUUGCAAACUGGUGAGCAGAAUAAGUU AAAAAAAAU UUUA               AAUAC GAAU   AUAA  U UU   A  G                               U         G    UAUUUUUUACUUUUC     -    UUU    CA |
Stem-loop sequence | GUUGUUGCUUGUAACGUUUGAUCACUCGUCUUAUUCAAUUUUUUUUGAAAUUAUUAAUUAUUUUAUUUAUGACUUACUUUAUUAUCUACAAUAUUUUAAGCAUAACUUUUCAUUUUUUAUAUUUGUAAAAAAAAUUUGAAUAAGACGAGUGGUCAAACGUUGUAAGGAAAAACUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_015763075.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA | protein trichome birefringence-like 28(LOC4327430) | coding protein | psRNATarget |