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BaseInfo

ncRNA ID novel_osa_miR2633
Species Oryza sativa
Class miRNA
Genome position Chr5:19224566-19224740 [-]
Reference genome IRGSP-1.0
Source SRR1849781
Length 20
Mature sequence(if miRNA) 1 - AACGUUGUAAGGAAAAACUU - 20
Stem-loop(if miRNA) --   G  G                               -         -    UAUUAAUUAUUUUAU     A    CUU    AU
  GUU UU CUUGUAACGUUUGAUCACUCGUCUUAUUCAA UUUUUUUUG AAAU               UUAUG CUUA   UAUU  C
  ||| || ||||||||||||||||||||||||||||||| ||||||||| ||||               ||||| ||||   ||||
  CAA AA GAAUGUUGCAAACUGGUGAGCAGAAUAAGUU AAAAAAAAU UUUA               AAUAC GAAU   AUAA  U
UU   A  G                               U         G    UAUUUUUUACUUUUC     -    UUU    CA
Stem-loop sequence GUUGUUGCUUGUAACGUUUGAUCACUCGUCUUAUUCAAUUUUUUUUGAAAUUAUUAAUUAUUUUAUUUAUGACUUACUUUAUUAUCUACAAUAUUUUAAGCAUAACUUUUCAUUUUUUAUAUUUGUAAAAAAAAUUUGAAUAAGACGAGUGGUCAAACGUUGUAAGGAAAAACUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015763075.1
ncRNA:20   UUCAAAAAGGAAUGUUGCAA   1
  =|||||||*|||||||||||
targets:2838   GAGUUUUUGCUUACAACGUU   2857

1.5 PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA protein trichome birefringence-like 28(LOC4327430) coding protein psRNATarget