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BaseInfo

ncRNA ID novel_osa_miR2628
Species Oryza sativa
Class miRNA
Genome position Chr4:22582072-22582172 [-]
Reference genome IRGSP-1.0
Source SRR1849780
Length 24
Mature sequence(if miRNA) 78 - AGACGAAUCUAAUGAUAUAUAUUA - 101
Stem-loop(if miRNA) --   C           UA          U      A  --------G    AU
  AGA GAAUCUAAUGA  UAUAUUAAUC AUGAUU GU         GCUG  U
  ||| |||||||||||  |||||||||| |||||| ||         ||||  A
  UCU CUUAGAUUGCU  AUAUAAUUAG UACUAA CG         CGAU  C
GC   A           CC          U      A  AUGUCCCUA    GU
Stem-loop sequence AGACGAAUCUAAUGAUAUAUAUUAAUCUAUGAUUAGUGGCUGAUUACUGUAGCAUCCCUGUAGCAAAUCAUUGAUUAAUAUACCUCGUUAGAUUCAUCUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015793320.1
ncRNA:24   AUUAUAUAUAGUAAUCUAAGCAGA   1
  *|||||||||||||||||||||||
targets:1938   CAAUAUAUAUCAUUAGAUUCGUCU   1961

0.0 PREDICTED: Oryza sativa Japonica Group DIBOA-glucoside dioxygenase BX6 (LOC4345480), mRNA DIBOA-glucoside dioxygenase BX6(LOC4345480) coding protein psRNATarget