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BaseInfo

ncRNA ID	novel_osa_miR2626
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:38724569-38724741 [+]
Reference genome	IRGSP-1.0
Source	SRR1849780
Length	24
Mature sequence(if miRNA)	150 - AGUCAAAGUUGGACACGAAAACCC - 173
Stem-loop(if miRNA)	--               G   A  C           --UUAAAAAAA      --------------------AAAA   AAAAAGACAAAUCAAGCA   GUUUUCGUGUCCAAC UUU AC GUUCGUCUUAU           UUAUAA                        GUU                  U   ||||||||||||||| ||| || |||||||||||           ||||||                        |||   CAAAAGCACAGGUUG AAA UG CAGGCAGAAUA           AAUAUU                        CUA                  A CC               -   C  A           UACUUUAAAAA      AAGCAUAGAAGUAACAACAAUCUA   UUUUGUACUAAUUAUAAA
Stem-loop sequence	GUUUUCGUGUCCAACGUUUAACCGUUCGUCUUAUUUAAAAAAAUUAUAAAAAAGUUAAAAAGACAAAUCAAGCAUAAAAUAUUAAUCAUGUUUUAUCAUCUAACAACAAUGAAGAUACGAAUUAUAAAAAAAUUUCAUAUAAGACGGACAGUCAAAGUUGGACACGAAAACCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK287962.1	ncRNA:24   CCCAAAAGCACAGGUUGAAACUGA   1   |*|||||||||||||||||||||| targets:994   GAGUUUUCGUGUCCAACUUUGACU   1017 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J075061F20, full insert sequence	NA	coding protein	psRNATarget
XM_015787836.1	ncRNA:24   CCCAAAAGCACAGGUUGAAACUGA   1   ||||||||||||||||||||*||* targets:1223   GGGUUUUCGUGUCCAACUUUAACG   1246 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342071 (LOC4342071), mRNA	uncharacterized LOC4342071(LOC4342071)	coding protein	psRNATarget
AK071262.1	ncRNA:24   CCCAAAAGCACAGGUUGAAACUGA   1   ||||||||||||||||||||*||* targets:1230   GGGUUUUCGUGUCCAACUUUAACG   1253 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023085J06, full insert sequence	NA	coding protein	psRNATarget
AK065567.1	ncRNA:24   CCCAAAAGCACAGGUUGAAACUGA   1   ||||||*||||||||||||||||* targets:820   GGGUUUCCGUGUCCAACUUUGACG   843 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013033D20, full insert sequence	NA	coding protein	psRNATarget
LQ235932.1	ncRNA:24   CCCAAAAGCACAGGUUGAAACUGA   1   |*||||||||||||||||||||=* targets:5   GAGUUUUCGUGUCCAACUUUGAUC   28 Target Full Sequence	2.5	Sequence 1927 from Patent EP2985353	NA	coding protein	psRNATarget
HI403802.1	ncRNA:24   CCCAAAAGCACAGGUUGAAACUGA   1   |*||||||||||||||||||||=* targets:5   GAGUUUUCGUGUCCAACUUUGAUC   28 Target Full Sequence	2.5	Sequence 1927 from Patent EP2074227	NA	coding protein	psRNATarget
JB164263.1	ncRNA:24   CCCAAAAGCACAGGUUGAAACUGA   1   |*||||||||||||||||||||=* targets:5   GAGUUUUCGUGUCCAACUUUGAUC   28 Target Full Sequence	2.5	Sequence 1927 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015770898.1	ncRNA:24   CCCAAAAGCACAGGUUGAAACUGA   1   ||*|||*||||||||||||||||| targets:3530   GGAUUUACGUGUCCAACUUUGACU   3553 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At5g65560 (LOC4329793), mRNA	pentatricopeptide repeat-containing protein At5g65560(LOC4329793)	coding protein	psRNATarget
XM_015782233.1	ncRNA:24   CCCAAAAGCACAGGUUGAAACUGA   1   ||*||||*|||||||||||||||* targets:2118   GGAUUUUAGUGUCCAACUUUGACC   2141 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group cytochrome P450 71A1 (LOC4339312), transcript variant X1, mRNA	cytochrome P450 71A1(LOC4339312)	coding protein	psRNATarget
XM_015782234.1	ncRNA:24   CCCAAAAGCACAGGUUGAAACUGA   1   ||*||||*|||||||||||||||* targets:2130   GGAUUUUAGUGUCCAACUUUGACC   2153 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group cytochrome P450 71A1 (LOC4339312), transcript variant X3, mRNA	cytochrome P450 71A1(LOC4339312)	coding protein	psRNATarget
XM_015775382.1	ncRNA:24   CCCAAAAGCACAGGUUGAAACUGA   1   |**|||||||*|||||=||||||| targets:2285   GAAUUUUCGUUUCCAAUUUUGACU   2308 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4332140 (LOC4332140), mRNA	uncharacterized LOC4332140(LOC4332140)	coding protein	psRNATarget
AK288706.1	ncRNA:24   CCCAAAAGCACAGGUUGAAACUGA   1   |**|||*|||||||||||||*||| targets:2929   GUAUUUCCGUGUCCAACUUUAACU   2952 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090061L24, full insert sequence	NA	coding protein	psRNATarget
CT836913.1	ncRNA:24   CCCAAAAGCA-CAGGUUGAAACUGA   1   |*****||||-|||||||||||||| targets:751   GCCCGCUCGUCGUCCAACUUUGACU   775 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114A04, full insert sequence	NA	coding protein	psRNATarget