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BaseInfo

ncRNA ID	novel_osa_miR2623
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:24990257-24990406 [+]
Reference genome	IRGSP-1.0
Source	SRR1849779;SRR2040382
Length	20
Mature sequence(if miRNA)	131 - UAAAGGACCGUAGAAUUGCU - 150
Stem-loop(if miRNA)	--                G G                   CUUUUUC  U      -   AA      U      C   CAAUUUUACGGUCCUU A GAGGUACUAUGAGGUACCA       UA UGUAAA UUU  UAUCUC UAGUAC U   |||||||||||||||| | |||||||||||||||||||       || |||||| |||  |||||| ||||||   GUUAAGAUGCCAGGAA U CUCCAUGGUACUCCAUGGU       AU ACAUUU AAA  AUGGAG AUCAUG A UC                A G                   -UUUUAA  C      U   CC      U      G
Stem-loop sequence	CAAUUUUACGGUCCUUGAGGAGGUACUAUGAGGUACCACUUUUUCUAUUGUAAAUUUAAUAUCUCUUAGUACCUAGGUACUAUGAGGUACCAAAUUUUACACUAAAUUUUUGGUACCUCAUGGUACCUCGUAAAGGACCGUAGAAUUGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK105471.1	ncRNA:20   UCGUUAAGAUGCCAGGAAAU   1   ||||||||||||||||||*| targets:1226   AGCAAUUCUACGGUCCUUAA   1245 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-127-A01, full insert sequence	NA	coding protein	psRNATarget
XM_015765620.1	ncRNA:20   UCGUUAAGAUGCCAGGAAAU   1   ||||||||||||||||||*| targets:1234   AGCAAUUCUACGGUCCUUAA   1253 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X1, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
XM_015765621.1	ncRNA:20   UCGUUAAGAUGCCAGGAAAU   1   ||||||||||||||||||*| targets:1252   AGCAAUUCUACGGUCCUUAA   1271 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X3, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
AK072846.1	ncRNA:20   UCGUUAAGAUGCCAGGAAAU   1   ||||||||||||||||||*| targets:1686   AGCAAUUCUACGGUCCUUAA   1705 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023143D15, full insert sequence	NA	coding protein	psRNATarget
XM_015790029.1	ncRNA:20   UCGUUAAGAUGCCAGGAAAU   1   ||||||||||||||||||*| targets:2067   AGCAAUUCUACGGUCCUUAA   2086 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X1, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015790030.1	ncRNA:20   UCGUUAAGAUGCCAGGAAAU   1   ||||||||||||||||||*| targets:2111   AGCAAUUCUACGGUCCUUAA   2130 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X2, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015786027.1	ncRNA:20   UCGUUAAGAUGCCAGGAAAU   1   ||||||||||||||||||*| targets:4598   AGCAAUUCUACGGUCCUUGA   4617 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget