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BaseInfo

ncRNA ID novel_osa_miR2617
Species Oryza sativa
Class miRNA
Genome position Chr3:29989221-29989301 [-]
Reference genome IRGSP-1.0
Source SRR1849778;SRR1849784;SRR2040380;SRR1612403;SRR1612404
Length 24
Mature sequence(if miRNA) 1 - AAUGAUCGGAAAUGAUUUGGUACC - 24
Stem-loop(if miRNA) --   A                   G       UGG  AG
  UAC AAAUCGUUUUCGAUCGUUG AUCUAGC   GU  G
  ||| ||||||||||||||||||| |||||||   ||  A
  AUG UUUAGUAAAGGCUAGUAAC UAGAUUG   CG  U
CC   G                   G       UUA  GA
Stem-loop sequence UACAAAAUCGUUUUCGAUCGUUGGAUCUAGCUGGGUAGGAUAGGCAUUGUUAGAUGCAAUGAUCGGAAAUGAUUUGGUACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI404330.1
ncRNA:22   AUGGUUUAGUAAAGGCUAGUAA   1
  |||=|||||||||||||||=||
targets:1   UACUAAAUCAUUUCCGAUCGUU   22

2.5 Sequence 2455 from Patent EP2074227 NA coding protein psRNATarget
LQ236460.1
ncRNA:22   AUGGUUUAGUAAAGGCUAGUAA   1
  |||=|||||||||||||||=||
targets:1   UACUAAAUCAUUUCCGAUCGUU   22

2.5 Sequence 2455 from Patent EP2985353 NA coding protein psRNATarget
JB164791.1
ncRNA:22   AUGGUUUAGUAAAGGCUAGUAA   1
  |||=|||||||||||||||=||
targets:1   UACUAAAUCAUUUCCGAUCGUU   22

2.5 Sequence 2455 from Patent EP2559767 NA coding protein psRNATarget