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BaseInfo

ncRNA ID	novel_osa_miR2615
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:28920994-28921142 [+]
Reference genome	IRGSP-1.0
Source	SRR1849778
Length	24
Mature sequence(if miRNA)	1 - AUUUUGAUCGUCCGUUUUAUUCGA - 24
Stem-loop(if miRNA)	--        C   C        C   AG       -----------UAUAAU    -- UUUUUAUUGUUCUGAGAUGAU   AUUUUGAU GUC GUUUUAUU GAA  UUUUUUA                 UAGU  A                     A   |||||||| ||| |||||||| |||  |||||||                 ||||  |                     A   UGAAAUUG CAG CGAAAUAA CUU  AAAAAAU                 AUUC  U                     A GU        C   A        A   -A       UUUUUUUAACUUUUUGU    AA ACAUAUUUUAUAAUAAGUAUA
Stem-loop sequence	AUUUUGAUCGUCCGUUUUAUUCGAAAGUUUUUUAUAUAAUUAGUAUUUUUAUUGUUCUGAGAUGAUAAAAUAUGAAUAAUAUUUUAUACAUAACUUAUGUUUUUCAAUUUUUUUUAAAAAAAUUCAAAUAAAGCAGACCGUUAAAGUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI404421.1	ncRNA:24   AGCUUAUUUUGCCUGCUAGUUUUA   1   ||*|||||=|||||||||||||=| targets:158   UCAAAUAAGACGGACGAUCAAAGU   181 Target Full Sequence	2.5	Sequence 2546 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236551.1	ncRNA:24   AGCUUAUUUUGCCUGCUAGUUUUA   1   ||*|||||=|||||||||||||=| targets:158   UCAAAUAAGACGGACGAUCAAAGU   181 Target Full Sequence	2.5	Sequence 2546 from Patent EP2985353	NA	coding protein	psRNATarget
JB164882.1	ncRNA:24   AGCUUAUUUUGCCUGCUAGUUUUA   1   ||*|||||=|||||||||||||=| targets:158   UCAAAUAAGACGGACGAUCAAAGU   181 Target Full Sequence	2.5	Sequence 2546 from Patent EP2559767	NA	coding protein	psRNATarget
AK288298.1	ncRNA:24   AGCUUAUUUUGCCUGCUAGUUUUA   1   ||*|||||=|||||||||||||=| targets:1299   UCAAAUAAGACGGACGAUCAAAGU   1322 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090019N21, full insert sequence	NA	coding protein	psRNATarget
AK289157.1	ncRNA:24   AGCUUAUUUUGCCUGCUAGUUUUA   1   ||*|||||=|||||||||||||=| targets:142   UCAAAUAAGACGGACGAUCAAAGU   165 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090099P09, full insert sequence	NA	coding protein	psRNATarget
LQ235922.1	ncRNA:24   AGCUUAUUUUGCCUGCUAGUUUUA   1   |=*|||||=|||||||||=||||| targets:150   UUAAAUAAGACGGACGAUUAAAAU   173 Target Full Sequence	2.5	Sequence 1917 from Patent EP2985353	NA	coding protein	psRNATarget
JB164253.1	ncRNA:24   AGCUUAUUUUGCCUGCUAGUUUUA   1   |=*|||||=|||||||||=||||| targets:150   UUAAAUAAGACGGACGAUUAAAAU   173 Target Full Sequence	2.5	Sequence 1917 from Patent EP2559767	NA	coding protein	psRNATarget
HI403792.1	ncRNA:24   AGCUUAUUUUGCCUGCUAGUUUUA   1   |=*|||||=|||||||||=||||| targets:150   UUAAAUAAGACGGACGAUUAAAAU   173 Target Full Sequence	2.5	Sequence 1917 from Patent EP2074227	NA	coding protein	psRNATarget
HI403802.1	ncRNA:24   AGCUUAUUUUGCCUGCUAGUUUUA   1   |=*|||||=|||||||||||||*| targets:136   UUAAAUAAGACGGACGAUCAAAUU   159 Target Full Sequence	2.5	Sequence 1927 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235932.1	ncRNA:24   AGCUUAUUUUGCCUGCUAGUUUUA   1   |=*|||||=|||||||||||||*| targets:136   UUAAAUAAGACGGACGAUCAAAUU   159 Target Full Sequence	2.5	Sequence 1927 from Patent EP2985353	NA	coding protein	psRNATarget
JB164263.1	ncRNA:24   AGCUUAUUUUGCCUGCUAGUUUUA   1   |=*|||||=|||||||||||||*| targets:136   UUAAAUAAGACGGACGAUCAAAUU   159 Target Full Sequence	2.5	Sequence 1927 from Patent EP2559767	NA	coding protein	psRNATarget
AK242594.1	ncRNA:24   AGCUUAUUUUGCCUGCUAGUUUUA   1   |=*|||||=|||*||||||||||| targets:1223   UUAAAUAAGACGAACGAUCAAAAU   1246 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090012I09, full insert sequence	NA	coding protein	psRNATarget
XM_015772368.1	ncRNA:24   AGCUUAUUUUGCCUGCUAGUUUUA   1   |=*|||||=|||*||||||||||| targets:1236   UUAAAUAAGACGAACGAUCAAAAU   1259 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GPN-loop GTPase 3 (LOC4333905), mRNA	GPN-loop GTPase 3(LOC4333905)	coding protein	psRNATarget