Search result

BaseInfo

ncRNA ID	novel_osa_miR2606
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:22488457-22488535 [-]
Reference genome	IRGSP-1.0
Source	SRR1849778;SRR5049778
Length	24
Mature sequence(if miRNA)	56 - AUCUUAGUACUAUGGAUUUGGGCA - 79
Stem-loop(if miRNA)	--                          AG   -A   UG   AUCUUAGUACUAUGGAUUUGGGCAGG  CUU  CUA  G   ||||||||||||||||||||||||||  |||  |||   UAGGAUCAUGAUACUUAGACCUGUUC  GGA  GGU  A CA                          GA   CG   UU
Stem-loop sequence	AUCUUAGUACUAUGGAUUUGGGCAGGAGCUUACUAUGGAUUUGGGCAGGAGCUUGUCCAGAUUCAUAGUACUAGGAUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236095.1	ncRNA:24   ACGGGUUUAGGUAUCAUGAUUCUA   1   ||=||||||=||||||||||=||| targets:32   UGUCCAAAUUCAUAGUACUAGGAU   55 Target Full Sequence	2.5	Sequence 2090 from Patent EP2985353	NA	coding protein	psRNATarget
HI403965.1	ncRNA:24   ACGGGUUUAGGUAUCAUGAUUCUA   1   ||=||||||=||||||||||=||| targets:32   UGUCCAAAUUCAUAGUACUAGGAU   55 Target Full Sequence	2.5	Sequence 2090 from Patent EP2074227	NA	coding protein	psRNATarget
JB164426.1	ncRNA:24   ACGGGUUUAGGUAUCAUGAUUCUA   1   ||=||||||=||||||||||=||| targets:32   UGUCCAAAUUCAUAGUACUAGGAU   55 Target Full Sequence	2.5	Sequence 2090 from Patent EP2559767	NA	coding protein	psRNATarget
HI403709.1	ncRNA:24   ACGGGUUUAGGUAUCAUGAUUCUA   1   ||=||||||*|||*|||||||||| targets:47   UGUCCAAAUACAUUGUACUAAGAU   70 Target Full Sequence	2.5	Sequence 1834 from Patent EP2074227	NA	coding protein	psRNATarget
JB164170.1	ncRNA:24   ACGGGUUUAGGUAUCAUGAUUCUA   1   ||=||||||*|||*|||||||||| targets:47   UGUCCAAAUACAUUGUACUAAGAU   70 Target Full Sequence	2.5	Sequence 1834 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235839.1	ncRNA:24   ACGGGUUUAGGUAUCAUGAUUCUA   1   ||=||||||*|||*|||||||||| targets:47   UGUCCAAAUACAUUGUACUAAGAU   70 Target Full Sequence	2.5	Sequence 1834 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015787953.1	ncRNA:24   ACGGGUUUAGGUAUCAUGAUUCUA   1   ||===||||=||||||||||*||| targets:2789   UGUUUAAAUUCAUAGUACUAUGAU   2812 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group U-box domain-containing protein 52 (LOC4340371), transcript variant X1, mRNA	U-box domain-containing protein 52(LOC4340371)	coding protein	psRNATarget