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BaseInfo

ncRNA ID	novel_osa_miR2602
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:2185175-2185345 [+]
Reference genome	IRGSP-1.0
Source	SRR1849778;SRR2040380;SRR2040388;SRR2040390;SRR2040392;SRR2040396;SRR2040409;SRR5049786
Length	23
Mature sequence(if miRNA)	1 - UUUCCGUGUUCAACUUUGACUGU - 23
Stem-loop(if miRNA)	--              -           G      A     UUUUUU     ----------------U  AUAUUUUCAUUGUUAUUAGAUGAU   UUUCCGUGUUCAAC UUUGACUGUCC UCUUAU UGAAA      UAUAA                 UC                        A   |||||||||||||| ||||||||||| |||||| |||||      |||||                 ||   AAAGGCACAGGUUG AAACUGGUAGG AGAAUA ACUUU      AUAUU                 CG                        A CC              C           A      A     --UUUU     UUUUUAAUUUUUCUAUU  GUGCGUAUUUUAUAAUUAGUAUAA
Stem-loop sequence	UUUCCGUGUUCAACUUUGACUGUCCGUCUUAUAUGAAAUUUUUUUAUAAUUCAUAUUUUCAUUGUUAUUAGAUGAUAAAAUAUGAUUAAUAUUUUAUGCGUGGCUUAUCUUUUUAAUUUUUUUAUAUUUUUUUCAAAUAAGAAGGAUGGUCAAACGUUGGACACGGAAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK071908.1	ncRNA:23   UGUCAGUUUCAACUUGUGCCUUU   1   ||=|||||||||||||=|||||| targets:871   ACGGUCAAAGUUGAACGCGGAAA   893 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013060N22, full insert sequence	NA	coding protein	psRNATarget
HI403795.1	ncRNA:23   UGUCAGUUU-CAACUUGUGCCUUU   1   ||=||=|||-|||||||||||||| targets:148   ACGGUUAAACGUUGAACACGGAAA   171 Target Full Sequence	3.0	Sequence 1920 from Patent EP2074227	NA	coding protein	psRNATarget
JB164256.1	ncRNA:23   UGUCAGUUU-CAACUUGUGCCUUU   1   ||=||=|||-|||||||||||||| targets:148   ACGGUUAAACGUUGAACACGGAAA   171 Target Full Sequence	3.0	Sequence 1920 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235925.1	ncRNA:23   UGUCAGUUU-CAACUUGUGCCUUU   1   ||=||=|||-|||||||||||||| targets:148   ACGGUUAAACGUUGAACACGGAAA   171 Target Full Sequence	3.0	Sequence 1920 from Patent EP2985353	NA	coding protein	psRNATarget
AK242553.1	ncRNA:23   UGUCAGUUUCAACUUGUGCCUUU   1   |||||||||*|||=||||||||| targets:325   ACAGUCAAAAUUGGACACGGAAA   347 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J080319L22, full insert sequence	NA	coding protein	psRNATarget
XM_015791114.1	ncRNA:23   UGUCAGUUUCAACUUGUGCCUUU   1   |=|||||||*|||=||||||||| targets:4109   AUAGUCAAAAUUGGACACGGAAA   4131 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4344401), transcript variant X2, mRNA	protein NETWORKED 2A(LOC4344401)	coding protein	psRNATarget
XM_015791113.1	ncRNA:23   UGUCAGUUUCAACUUGUGCCUUU   1   |=|||||||*|||=||||||||| targets:4141   AUAGUCAAAAUUGGACACGGAAA   4163 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4344401), transcript variant X1, mRNA	protein NETWORKED 2A(LOC4344401)	coding protein	psRNATarget
AK100615.1	ncRNA:23   UGUCAGUUUCAACUUGUGCCUUU   1   |=|||||||*|||=||||||||| targets:4218   AUAGUCAAAAUUGGACACGGAAA   4240 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023108B01, full insert sequence	NA	coding protein	psRNATarget