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BaseInfo

ncRNA ID	novel_osa_miR2601
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:33572262-33572326 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR2458631;SRR3123651;SRR1556014;SRR4407959;SRR1738240
Length	22
Mature sequence(if miRNA)	1 - CUAGGUUUGUUUAUUUUGGGAC - 22
Stem-loop(if miRNA)	--                G     UA     U   UCCAAAAUAAACAAAC UAGUA  GGGUG G   |||||||||||||||| |||||  ||||| A   GGGUUUUAUUUGUUUG AUCAU  CCUAC C CA                G     GC     A
Stem-loop sequence	UCCAAAAUAAACAAACGUAGUAUAGGGUGUGACACAUCCCGUACUAGGUUUGUUUAUUUUGGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235866.1	ncRNA:22   CAGGGUUUUAUUUGUUUGGAUC   1   ||=|||||||||||||||*||| targets:11   GUUCCAAAAUAAACAAACGUAG   32 Target Full Sequence	1.5	Sequence 1861 from Patent EP2985353	NA	coding protein	psRNATarget
HI403736.1	ncRNA:22   CAGGGUUUUAUUUGUUUGGAUC   1   ||=|||||||||||||||*||| targets:11   GUUCCAAAAUAAACAAACGUAG   32 Target Full Sequence	1.5	Sequence 1861 from Patent EP2074227	NA	coding protein	psRNATarget
JB164197.1	ncRNA:22   CAGGGUUUUAUUUGUUUGGAUC   1   ||=|||||||||||||||*||| targets:11   GUUCCAAAAUAAACAAACGUAG   32 Target Full Sequence	1.5	Sequence 1861 from Patent EP2559767	NA	coding protein	psRNATarget
AK063393.1	ncRNA:22   CAGGGUUUUAUUUGUUUGGAUC   1   ||||||||||||||||||*||* targets:1131   GUCCCAAAAUAAACAAACAUAU   1152 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-114-H05, full insert sequence	NA	coding protein	psRNATarget
XM_015784597.1	ncRNA:22   CAGGGUUUUAUUUGUUUGGAUC   1   *|||=|||||||||*||||||| targets:2352   AUCCUAAAAUAAACCAACCUAG   2373 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784596.1	ncRNA:22   CAGGGUUUUAUUUGUUUGGAUC   1   *|||=|||||||||*||||||| targets:2352   AUCCUAAAAUAAACCAACCUAG   2373 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784593.1	ncRNA:22   CAGGGUUUUAUUUGUUUGGAUC   1   *|||=|||||||||*||||||| targets:2352   AUCCUAAAAUAAACCAACCUAG   2373 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784595.1	ncRNA:22   CAGGGUUUUAUUUGUUUGGAUC   1   *|||=|||||||||*||||||| targets:2352   AUCCUAAAAUAAACCAACCUAG   2373 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
LQ236085.1	ncRNA:19   GGUUUUAUUUGUUUGGAUC   1   |=|||||||||*||||||| targets:1   CUAAAAUAAACCAACCUAG   19 Target Full Sequence	2.5	Sequence 2080 from Patent EP2985353	NA	coding protein	psRNATarget
JB164416.1	ncRNA:19   GGUUUUAUUUGUUUGGAUC   1   |=|||||||||*||||||| targets:1   CUAAAAUAAACCAACCUAG   19 Target Full Sequence	2.5	Sequence 2080 from Patent EP2559767	NA	coding protein	psRNATarget
HI403955.1	ncRNA:19   GGUUUUAUUUGUUUGGAUC   1   |=|||||||||*||||||| targets:1   CUAAAAUAAACCAACCUAG   19 Target Full Sequence	2.5	Sequence 2080 from Patent EP2074227	NA	coding protein	psRNATarget