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BaseInfo

ncRNA ID	novel_osa_miR2597
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:25406851-25406997 [-]
Reference genome	IRGSP-1.0
Source	SRR1849778
Length	24
Mature sequence(if miRNA)	124 - AUAGAUUCCGCCUGUAAACUGUGA - 147
Stem-loop(if miRNA)	----       CC  C      C  UG          A            AAUCCAUCAUUA    AU UUUACUGUUGCAC     AUAGAUU  GC UGUAAA UG  AGACAAAUUU UUAAGCCUAAUU            GCAA  G             C     |||||||  || |||||| ||  |||||||||| ||||||||||||            ||||  |     UGUCUAA  CG ACAUUU AC  UCUGUUUAGA AAUUUGGAUUAA            ACGG  U             A AAUG       --  C      A  GU          A            -----------C    -- ACUAAACUGUUAC
Stem-loop sequence	AUAGAUUCCGCCUGUAAACUGUGAGACAAAUUUAUUAAGCCUAAUUAAUCCAUCAUUAGCAAAUGUUUACUGUUGCACCACAUUGUCAAAUCAUGGCACAAUUAGGUUUAAAAGAUUUGUCUUGCAAUUUACACGCAAUCUGUGUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK099913.1	ncRNA:24   AGUGUCAAAUGUCCGCCUUAGAUA   1   ||=||||||||||||||||||||| targets:808   UCGCAGUUUACAGGCGGAAUCUAU   831 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013116E13, full insert sequence	NA	coding protein	psRNATarget
AK288682.1	ncRNA:24   AGUGUCAAAUGUCCGCCUUAGAUA   1   ||=||||||||||||||||||||| targets:448   UCGCAGUUUACAGGCGGAAUCUAU   471 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090059I11, full insert sequence	NA	coding protein	psRNATarget
AK064922.1	ncRNA:24   AGUGUCAAAUGUCCGCCUUAGAUA   1   ||=||||||||||||||||||||| targets:2051   UCGCAGUUUACAGGCGGAAUCUAU   2074 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013000N12, full insert sequence	NA	coding protein	psRNATarget
AK067578.1	ncRNA:24   AGUGUCAAAUGUCCGCCUUAGAUA   1   ||=|||||||||||||||||||=| targets:1775   UCGCAGUUUACAGGCGGAAUCUGU   1798 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
AM778048.1	ncRNA:24   AGUGUCAAAUGUCCGCCUUAGAUA   1   ||=|||||||||||||||||||=| targets:78   UCGCAGUUUACAGGCGGAAUCUGU   101 Target Full Sequence	1.5	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget
XM_015764825.1	ncRNA:24   AGUGUCAAAUGUCCGCCUUAGAUA   1   ||=|||||||||||||||||||=| targets:78   UCGCAGUUUACAGGCGGAAUCUGU   101 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget
XM_015769825.1	ncRNA:24   AGUGUCAAAUGUCCGCCUUAGAUA   1   ||=|||||||=|||||||||||=| targets:732   UCGCAGUUUAUAGGCGGAAUCUGU   755 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At4g30940 (LOC4329965), mRNA	BTB/POZ domain-containing protein At4g30940(LOC4329965)	coding protein	psRNATarget
AK288216.1	ncRNA:24   AGUGUCAAAUGUCCGCCUUAGAUA   1   ||=|||||||=|||||||||||=| targets:737   UCGCAGUUUAUAGGCGGAAUCUGU   760 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090011C22, full insert sequence	NA	coding protein	psRNATarget
CT837782.1	ncRNA:24   AGUGUCAAAUGUCCGCCUUAGAUA   1   ||=|||||||||||*||||||||| targets:1539   UCGCAGUUUACAGGGGGAAUCUAU   1562 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244J06, full insert sequence	NA	coding protein	psRNATarget
AK288617.1	ncRNA:24   AGUGUCAAAUGUCCGCCUUAGAUA   1   ||=||||||*||||||||||||=| targets:2696   UCGCAGUUUUCAGGCGGAAUCUGU   2719 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090054B15, full insert sequence	NA	coding protein	psRNATarget