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BaseInfo

ncRNA ID novel_osa_miR2596
Species Oryza sativa
Class miRNA
Genome position Chr5:19943655-19943703 [-]
Reference genome IRGSP-1.0
Source SRR1298758;SRR1555749;SRR2097778;SRR2097779;SRR2098560;SRR2098823;SRR2099428;SRR1556016;SRR1298766;SRR1300837
Length 24
Mature sequence(if miRNA) 1 - GGGGACGGCGCCAGCCACUCUGGC - 24
Stem-loop(if miRNA) --  U              -  AUG
  CA GGUGGCUGGUGCCG CC   U
  || |||||||||||||| ||
  GU UCACCGACCGCGGC GG   U
CG  C              A  GGG
Stem-loop sequence CAUGGUGGCUGGUGCCGCCAUGUUGGGGGACGGCGCCAGCCACUCUGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288284.1
ncRNA:24   CGGUCUCACCGACCGCGGCAGGGG   1
  |||||||*|||||||||||||||*
targets:1472   GCCAGAGAGGCUGGCGCCGUCCCG   1495

2.0 Oryza sativa Japonica Group cDNA, clone: J090018D15, full insert sequence NA coding protein psRNATarget