Search result

BaseInfo

ncRNA ID	novel_osa_miR2586
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:16304109-16304312 [-]
Reference genome	IRGSP-1.0
Source	SRR1849777
Length	24
Mature sequence(if miRNA)	181 - AUGUAUAACGCCGUUGACUUUUCG - 204
Stem-loop(if miRNA)	--    AUA    C          CGAC           C                 U         AA     AAAUA     GUCAU   UAAAGAAUAUU    G   AUGU   ACGC GUUGACUUUU    CAACGUUUGAC AUUCGUUUUAUUCAAAA UUUUGUGUA  UAUCA     UUUAU     GCU           UGAU A   ||||   |||| ||||||||||    ||||||||||| ||||||||||||||||| |||||||||  |||||     |||||     |||           |||| C   UACA   UGCG CAACUGAAAA    GUUGCAAACUG UAAGCAGAAUAAGUUUU AAAAUACAU  AUAGU     AAAUA     CGA           ACUA G UU    GGC    A          -AAA           A                 U         AA     AAAUA     -ACAC   -----------    A
Stem-loop sequence	AUGUAUAACGCCGUUGACUUUUCGACCAACGUUUGACCAUUCGUUUUAUUCAAAAUUUUUGUGUAAAUAUCAAAAUAUUUAUGUCAUGCUUAAAGAAUAUUUGAUGACGAAUCAAGCCACAAUAAAAUAAAUGAUAAAUACAUAAAAUUUUUGAAUAAGACGAAUAGUCAAACGUUGAAAAAAAGUCAACAGCGUCGGACAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015792366.1	ncRNA:24   GCUUUUCAGUUGCCGCAAUAUGUA   1   |||||||||||||||||*|||||| targets:860   CGAAAAGUCAACGGCGUCAUACAU   883 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271886 (LOC9271886), mRNA	uncharacterized LOC9271886(LOC9271886)	coding protein	psRNATarget
AK287754.1	ncRNA:24   GCUUUUCAGUUGCCGCAAUAUGUA   1   |||||||||||||||||*|||||| targets:868   CGAAAAGUCAACGGCGUCAUACAU   891 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065157N06, full insert sequence	NA	coding protein	psRNATarget
XM_015768863.1	ncRNA:24   GCUUUUCAGUUGCCGCAAUAUGUA   1   |||||*|||||||||||||||||| targets:231   CGAAAUGUCAACGGCGUUAUACAU   254 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279962 (LOC107279962), mRNA	uncharacterized LOC107279962(LOC107279962)	coding protein	psRNATarget
AK288521.1	ncRNA:24   GCUUUUCAGUUGCCGCAAUAUGUA   1   |||||*|||||||||||||||||| targets:237   CGAAAUGUCAACGGCGUUAUACAU   260 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090044A07, full insert sequence	NA	coding protein	psRNATarget
AK288703.1	ncRNA:24   GCUUUUCAGUUGCCGCAAUAUGUA   1   |*|||||||||||||||*|||||| targets:3221   CAAAAAGUCAACGGCGUCAUACAU   3244 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090061G13, full insert sequence	NA	coding protein	psRNATarget
CT834259.1	ncRNA:24   GCUUUUCAGUUGCCGCAAUAUGUA   1   =*|||||||||||||||*|||||| targets:853   UAAAAAGUCAACGGCGUCAUACAU   876 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA044D20, full insert sequence	NA	coding protein	psRNATarget
CT829822.1	ncRNA:24   GCUUUUCAGUUGCCGCAAUAUGUA   1   **|||||||||||||||||*|||| targets:622   AAAAAAGUCAACGGCGUUAAACAU   645 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B24, full insert sequence	NA	coding protein	psRNATarget
XM_015786574.1	ncRNA:24   GCUUUUCAGUUGCCGCAAUAUGUA   1   =*|||||||||||||||*|||||| targets:1654   UUAAAAGUCAACGGCGUCAUACAU   1677 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group AAA-ATPase At3g50940 (LOC4341947), mRNA	AAA-ATPase At3g50940(LOC4341947)	coding protein	psRNATarget
AK066336.1	ncRNA:24   GCUUUUCAGUUGCCGCAAUAUGUA   1   =*|||||||||||||||*|||||| targets:1789   UAAAAAGUCAACGGCGUCAUACAU   1812 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013063O11, full insert sequence	NA	coding protein	psRNATarget
XM_015756907.1	ncRNA:24   GCUUUUCAGUUGCCGCAAUAUGUA   1   =*|||||||||||||||*|||||| targets:1781   UAAAAAGUCAACGGCGUCAUACAU   1804 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable inactive beta-glucosidase 33 (LOC4347547), mRNA	probable inactive beta-glucosidase 33(LOC4347547)	coding protein	psRNATarget
AK288474.1	ncRNA:24   GCUUUUCAGUUGCCGCAAUAUGUA   1   =*|||||||||||||||*|||||| targets:1178   UAAAAAGUCAACGGCGUCAUACAU   1201 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090038A02, full insert sequence	NA	coding protein	psRNATarget