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BaseInfo

ncRNA ID novel_osa_miR2582
Species Oryza sativa
Class miRNA
Genome position Chr1:25879053-25879225 [+]
Reference genome IRGSP-1.0
Source SRR1849777
Length 21
Mature sequence(if miRNA) 1 - GACGUGACCUACAACUUUGUA - 21
Stem-loop(if miRNA) --       C                   -------------------------A      UGAAUUAAAACUGUUUAGGGUCCCAAAAUAUUGUUGCA
  GACGUGA CUACAACUUUGUAGUUGAA                          AGUUUU                                      U
  ||||||| |||||||||||||||||||                          ||||||
  CUGCACU GAUGUUGAAACAUCAACUU                          CAGGGU                                      G
AG       A                   AAAAAAAAAUAAAAUUCAGUUAAAAA      UUUACAUUAAAAUUUUAAUUUUAAAGUUUUAGAUAUUU
Stem-loop sequence GACGUGACCUACAACUUUGUAGUUGAAAAGUUUUUGAAUUAAAACUGUUUAGGGUCCCAAAAUAUUGUUGCAUGUUUAUAGAUUUUGAAAUUUUAAUUUUAAAAUUACAUUUUGGGACAAAAAUUGACUUAAAAUAAAAAAAAAUUCAACUACAAAGUUGUAGAUCACGUCGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288437.1
ncRNA:21   AUGUUUCAACAUCCAGUGCAG   1
  |||||||||||||||||=|||
targets:1398   UACAAAGUUGUAGGUCAUGUC   1418

1.5 Oryza sativa Japonica Group cDNA, clone: J090034B12, full insert sequence NA coding protein psRNATarget