ncRNA ID | novel_osa_miR2582 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr1:25879053-25879225 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1849777 |
Length | 21 |
Mature sequence(if miRNA) | 1 - GACGUGACCUACAACUUUGUA - 21 |
Stem-loop(if miRNA) |
--       C                   -------------------------A      UGAAUUAAAACUGUUUAGGGUCCCAAAAUAUUGUUGCA   GACGUGA CUACAACUUUGUAGUUGAA                          AGUUUU                                      U   ||||||| |||||||||||||||||||                          ||||||   CUGCACU GAUGUUGAAACAUCAACUU                          CAGGGU                                      G AG       A                   AAAAAAAAAUAAAAUUCAGUUAAAAA      UUUACAUUAAAAUUUUAAUUUUAAAGUUUUAGAUAUUU |
Stem-loop sequence | GACGUGACCUACAACUUUGUAGUUGAAAAGUUUUUGAAUUAAAACUGUUUAGGGUCCCAAAAUAUUGUUGCAUGUUUAUAGAUUUUGAAAUUUUAAUUUUAAAAUUACAUUUUGGGACAAAAAUUGACUUAAAAUAAAAAAAAAUUCAACUACAAAGUUGUAGAUCACGUCGA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK288437.1 |
|
1.5 | Oryza sativa Japonica Group cDNA, clone: J090034B12, full insert sequence | NA | coding protein | psRNATarget |