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BaseInfo

ncRNA ID	novel_osa_miR2575
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:9499499-9499701 [-]
Reference genome	IRGSP-1.0
Source	SRR1849776
Length	24
Mature sequence(if miRNA)	180 - AAACGUAGAUUACUGACAAAACCU - 203
Stem-loop(if miRNA)	--AAAC                   U               AG       A              C  GA                 U  U  AG    -  U       GUAGAUUACUGACAAAACC AUUCCAUAACCCCUA  CUAUUUU CGAGACGAAUCUAA GA  UAUAUUAAUCCAUGAUU GC AC  UGAU GC A       ||||||||||||||||||| |||||||||||||||  ||||||| |||||||||||||| ||  ||||||||||||||||| || ||  |||| ||       CAUCUAAUGGCUGUUUUGG UAAGGUAUUGGGGAU  GAUAAAA GCUCUGUUUGGAUU CU  AUAUAAUUAGGUACUAA CG UG  ACUA UG C AAUUUA                   C               CA       C              A  AC                 U  C  --    A  A
Stem-loop sequence	AAACGUAGAUUACUGACAAAACCUAUUCCAUAACCCCUAAGCUAUUUUACGAGACGAAUCUAACGAGAUAUAUUAAUCCAUGAUUUGCUACAGUGAUGCUACAGUAAUCAGUCGCUAAUCAUGGAUUAAUAUACAUCAUUAGGUUUGUCUCGCAAAAUAGACUAGGGGUUAUGGAAUCGGUUUUGUCGGUAAUCUACAUUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015781418.1	ncRNA:24   UCCAAAACAGUCAUUAGAUGCAAA   1   |||||||*|||||||||||=|||| targets:1306   AGGUUUUAUCAGUAAUCUAUGUUU   1329 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group serine/arginine repetitive matrix protein 1 (LOC4335446), mRNA	serine/arginine repetitive matrix protein 1(LOC4335446)	coding protein	psRNATarget
AK107263.1	ncRNA:24   UCCAAAACAGUCAUUAGAUGCAAA   1   |||||||*|||||||||||=|||| targets:1217   AGGUUUUAUCAGUAAUCUAUGUUU   1240 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-125-H03, full insert sequence	NA	coding protein	psRNATarget
XM_015766387.1	ncRNA:24   UCCAAAACAGUCAUUAGAUGCAAA   1   **|||||||=|*|||||||||||| targets:22   UUGUUUUGUUAUUAAUCUACGUUU   45 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325753 (LOC4325753), mRNA	uncharacterized LOC4325753(LOC4325753)	coding protein	psRNATarget
AK240978.1	ncRNA:24   UCCAAAACAGUCAUUAGAUGCAAA   1   **|||||||*|||||||||=|||| targets:541   UAGUUUUGUAAGUAAUCUAUGUUU   564 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065048J02, full insert sequence	NA	coding protein	psRNATarget
XM_015762321.1	ncRNA:24   UCCAAAACAGUCAUUAGAUGCAAA   1   =**||||*|||||||||||||||| targets:1110   GAAUUUUAUCAGUAAUCUACGUUU   1133 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group transcription initiation factor TFIID subunit 13 (LOC9268703), mRNA	transcription initiation factor TFIID subunit 13(LOC9268703)	coding protein	psRNATarget