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BaseInfo

ncRNA ID	novel_osa_miR2570
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:21378089-21378290 [+]
Reference genome	IRGSP-1.0
Source	SRR1849776;SRR1849781;SRR1849784;SRR2040394
Length	23
Mature sequence(if miRNA)	1 - AAACGUAGAUUACUGAUAAAACC - 23
Stem-loop(if miRNA)	--                      C                 -                       A            UC   A  U  UACA     -  U   AAACGUAGAUUACUGAUAAAAC CAUUCCAUAACCCCUGG CUAUUUUGCGAGACGAAUCUAAC AGGUAUAUUAAU  AUG UU GC    GUGAU GC A   |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||  ||| || ||    ||||| ||   UUUGUAUUUAAUGACUGUUUUG GUAAGGUAUUGGGGACC GAUAAAACGCUCUGCUUAGAUUG UCCAUAUAAUUA  UAC AA CG    UAUUA UG C AA                      A                 U                       C            GA   C  U  --CC     A  A
Stem-loop sequence	AAACGUAGAUUACUGAUAAAACCCAUUCCAUAACCCCUGGCUAUUUUGCGAGACGAAUCUAACAAGGUAUAUUAAUUCAUGAUUUGCUACAGUGAUGCUACAGUAAUUAUCCGCUAACCAUAGAUUAAUAUACCUCGUUAGAUUCGUCUCGCAAAAUAGUCCAGGGGUUAUGGAAUGAGUUUUGUCAGUAAUUUAUGUUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015781418.1	ncRNA:23   CCAAAAUAGUCAUUAGAUGCAAA   1   ||||||||||||||||||=|||| targets:1307   GGUUUUAUCAGUAAUCUAUGUUU   1329 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group serine/arginine repetitive matrix protein 1 (LOC4335446), mRNA	serine/arginine repetitive matrix protein 1(LOC4335446)	coding protein	psRNATarget
AK107263.1	ncRNA:23   CCAAAAUAGUCAUUAGAUGCAAA   1   ||||||||||||||||||=|||| targets:1218   GGUUUUAUCAGUAAUCUAUGUUU   1240 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-125-H03, full insert sequence	NA	coding protein	psRNATarget
XM_015762321.1	ncRNA:23   CCAAAAUAGUCAUUAGAUGCAAA   1   **||||||||||||||||||||| targets:1111   AAUUUUAUCAGUAAUCUACGUUU   1133 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group transcription initiation factor TFIID subunit 13 (LOC9268703), mRNA	transcription initiation factor TFIID subunit 13(LOC9268703)	coding protein	psRNATarget