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BaseInfo

ncRNA ID	novel_osa_miR2568
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:5672881-5672964 [+]
Reference genome	IRGSP-1.0
Source	SRR1849776;SRR1849784
Length	23
Mature sequence(if miRNA)	1 - UUGGAUUGAAGUCAAAAUAGCCU - 23
Stem-loop(if miRNA)	--    A           --A    CUA  UUUACUAUUGAAA   UUGG UUGAAGUCAAA   UAGC   AG             U   |||| |||||||||||   ||||   ||             G   AACC AACUUCGGUUU   AUCG   CA             G UA    A           AAA    -UA  GAUUCUUUUAUCU
Stem-loop sequence	UUGGAUUGAAGUCAAAAUAGCCUAAGUUUACUAUUGAAAUGGUCUAUUUUCUUAGACAUGCUAAAAUUUGGCUUCAAACCAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK108595.1	ncRNA:23   UCCGAUAAAACUGAAGUUAGGUU   1   |||||||||||=||||||||||| targets:723   AGGCUAUUUUGGCUUCAAUCCAA   745 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-146-D12, full insert sequence	NA	coding protein	psRNATarget
XM_015791299.1	ncRNA:23   UCCGAUAAAACUGAAGUUAGGUU   1   |||||||||||=||||||||||| targets:838   AGGCUAUUUUGGCUUCAAUCCAA   860 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325522 (LOC4325522), mRNA	uncharacterized LOC4325522(LOC4325522)	coding protein	psRNATarget
XM_015764425.1	ncRNA:23   UCCGAUAAAACUGAAGUUAGGUU   1   |||||||||||=||||||||||| targets:682   AGGCUAUUUUGGCUUCAAUCCAA   704 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system (LOC4351341), transcript variant X2, mRNA	dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system(LOC4351341)	coding protein	psRNATarget
XM_015764426.1	ncRNA:23   UCCGAUAAAACUGAAGUUAGGUU   1   |||||||||||=||||||||||| targets:677   AGGCUAUUUUGGCUUCAAUCCAA   699 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system (LOC4351341), transcript variant X3, mRNA	dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system(LOC4351341)	coding protein	psRNATarget
AK121371.1	ncRNA:23   UCCGAUAAA-ACUGAAGUUAGGUU   1   ****|||||-|||||||||||||* targets:1451   CUCAUAUUUGUGACUUCAAUCCAC   1474 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023126G14, full insert sequence	NA	coding protein	psRNATarget
XM_015789392.1	ncRNA:23   UCCGAUAAA-ACUGAAGUUAGGUU   1   ****|||||-|||||||||||||* targets:1472   CUCAUAUUUGUGACUUCAAUCCAC   1495 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344214 (LOC4344214), transcript variant X1, mRNA	uncharacterized LOC4344214(LOC4344214)	coding protein	psRNATarget
XM_015789393.1	ncRNA:23   UCCGAUAAA-ACUGAAGUUAGGUU   1   ****|||||-|||||||||||||* targets:1475   CUCAUAUUUGUGACUUCAAUCCAC   1498 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344214 (LOC4344214), transcript variant X2, mRNA	uncharacterized LOC4344214(LOC4344214)	coding protein	psRNATarget