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BaseInfo

ncRNA ID novel_osa_miR2565
Species Oryza sativa
Class miRNA
Genome position Chr3:18672629-18672683 [+]
Reference genome IRGSP-1.0
Source SRR1555746;SRR2098557;SRR1556014
Length 24
Mature sequence(if miRNA) 1 - UGGGGAUGGGGAAUUGAGGAAGGA - 24
Stem-loop(if miRNA) --  GG       A      G     AC
  UG  GAUGGGG AUUGAG AAGGA  C
  ||  ||||||| |||||| |||||
  AC  UUACUCC UAACUU UUCCU  C
UA  UU       A      -     CC
Stem-loop sequence UGGGGAUGGGGAAUUGAGGAAGGAACCCCCUCCUUUUCAAUACCUCAUUUUCAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK102177.1
ncRNA:24   AGGAAGGAGUUAAGGGGUAGGGGU   1
  ||||||||||||||||||||||||
targets:957   UCCUUCCUCAAUUCCCCAUCCCCA   980

0.0 Oryza sativa Japonica Group cDNA clone:J033086L12, full insert sequence NA coding protein psRNATarget
AK241331.1
ncRNA:24   AGGAAGGAGUUAAGGGGUAGGGGU   1
  |||*||||||*||||||*||||||
targets:61   UCCCUCCUCAUUUCCCCCUCCCCA   84

2.5 Oryza sativa Japonica Group cDNA, clone: J065144C21, full insert sequence NA coding protein psRNATarget