ncRNA ID | novel_osa_miR2563 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr5:16122428-16122630 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1849776;SRR2040401 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAACGUAGAUUAUCGACAAAACCG - 24 |
Stem-loop(if miRNA) |
--AAA          C         G           C   AA                         U           C      A  -----G    AUUA      CGUAGAUUAU GACAAAACC AUUUUAUAACC CUA  CUAUUUUGCGAGACGAAUUUAAUGA GUAUAUUAAUC AUGAUU GU      GAUG    C      |||||||||| ||||||||| ||||||||||| |||  ||||||||||||||||||||||||| ||||||||||| |||||| ||      ||||      GCAUCUAAUG CUGUUUUGG UAAGAUAUUGG GAU  GAUAAAACGCUCUGCUUAGAUUGCU CAUAUAAUUAG UACUAA CG      CUAC    U AAUUA          A         G           A   CC                         C           A      A  AUGUCA    GAUG |
Stem-loop sequence | AAACGUAGAUUAUCGACAAAACCGAUUUUAUAACCCCUAAACUAUUUUGCGAGACGAAUUUAAUGAUGUAUAUUAAUCCAUGAUUAGUGGAUGAUUACUGUAGCAUCACUGUAGCAAAUCAUAGAUUAAUAUACCUCGUUAGAUUCGUCUCGCAAAAUAGCCUAGAGGUUAUAGAAUGGGUUUUGUCAGUAAUCUACGAUUAA |