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BaseInfo

ncRNA ID	novel_osa_miR2562
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:5279720-5279841 [+]
Reference genome	IRGSP-1.0
Source	SRR1849776
Length	22
Mature sequence(if miRNA)	1 - CAUAAAAAACGAAUCUAGAACC - 22
Stem-loop(if miRNA)	--          G       A              U                        A   CAUAAAAAAC AAUCUAG ACCGGAUGUGAUAU UUCUAGUACUAUGAAUCUGGACGU U   |||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||   GUAUUUUUUG UUGGAUC UGGCCUACGCUGUG AGGAUCAUGAUGCUUAGAUCUGUA A GG          G       A              U                        U
Stem-loop sequence	CAUAAAAAACGAAUCUAGAACCGGAUGUGAUAUUUUCUAGUACUAUGAAUCUGGACGUAUAUAUGUCUAGAUUCGUAGUACUAGGAUGUGUCGCAUCCGGUACUAGGUUGGUUUUUUAUGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107107.1	ncRNA:22   CCAAGAUCUAAGCAAAAAAUAC   1   |||*|||||||||||||||||| targets:936   GGUACUAGAUUCGUUUUUUAUG   957 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-122-A12, full insert sequence	NA	coding protein	psRNATarget
XM_015763640.1	ncRNA:22   CCAAGAUCUAAGCAAAAAAUAC   1   *||*|||||||*|||||||||| targets:3244   AGUACUAGAUUGGUUUUUUAUG   3265 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g52620 (LOC9268419), mRNA	pentatricopeptide repeat-containing protein At1g52620(LOC9268419)	coding protein	psRNATarget
AK110747.1	ncRNA:22   CCAAGAUCUAAGCAAAAAAUAC   1   *||*|||||||*|||||||||| targets:557   AGUACUAGAUUGGUUUUUUAUG   578 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-170-G02, full insert sequence	NA	coding protein	psRNATarget