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BaseInfo

ncRNA ID	novel_osa_miR2560
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:17711686-17711746 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1556014
Length	24
Mature sequence(if miRNA)	1 - CACUUUUAGAUUUGGCAAUUAACU - 24
Stem-loop(if miRNA)	--                           U   CACUUUUAGAUUUGGCAAUUAACUAUU G   ||||||||||||||||||||||||||| C   GUGAAAAUCUAAACCGUUAAUUGAUAA C CG                           A
Stem-loop sequence	CACUUUUAGAUUUGGCAAUUAACUAUUUGCCAAAUAGUUAAUUGCCAAAUCUAAAAGUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK069218.1	ncRNA:24   UCAAUUAACGGUUUAGAUUUUCAC   1   |||||*|||||||||||||||||| targets:2538   AGUUAUUUGCCAAAUCUAAAAGUG   2561 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023010O06, full insert sequence	NA	coding protein	psRNATarget
AK287806.1	ncRNA:24   UCAAUUAACGGUUUAGAUUUUCAC   1   =||||||||=|||||*|||||||| targets:2316   GGUUAAUUGUCAAAUGUAAAAGUG   2339 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065178E19, full insert sequence	NA	coding protein	psRNATarget
XM_015788303.1	ncRNA:24   UCAAUUAACGGUUUAGAUUUUCAC   1   =**|||||||=||||||||||||| targets:68   GAAUAAUUGCUAAAUCUAAAAGUG   91 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340211 (LOC4340211), transcript variant X1, mRNA	uncharacterized LOC4340211(LOC4340211)	coding protein	psRNATarget
XM_015788304.1	ncRNA:24   UCAAUUAACGGUUUAGAUUUUCAC   1   =**|||||||=||||||||||||| targets:69   GAAUAAUUGCUAAAUCUAAAAGUG   92 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340211 (LOC4340211), transcript variant X2, mRNA	uncharacterized LOC4340211(LOC4340211)	coding protein	psRNATarget
AK101336.1	ncRNA:24   UCAAUUAACGGUUUAGAUUUUCAC   1   =|*|||*|||||||*||||||||| targets:2846   GGAUAACUGCCAAACCUAAAAGUG   2869 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033034J09, full insert sequence	NA	coding protein	psRNATarget