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BaseInfo

ncRNA ID	novel_osa_miR2550
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:23157439-23157662 [-]
Reference genome	IRGSP-1.0
Source	SRR1849776
Length	24
Mature sequence(if miRNA)	201 - AUUUGGAGUAUUGAAUAUAGACUA - 224
Stem-loop(if miRNA)	--                     -CU    A     UA         AUAA AG     C                 AA   -      AU        AUUA    UUUACUUU   AUUUGGAGUAUUGAAUAUAGA   AAUA AAAAU  AUUUCAUAA    G  UUAAU CGUGAGACGAAUUUUUU  GAC UAAUUA  CUAUGAUU    AAAG        A   |||||||||||||||||||||   |||| |||||  |||||||||    |  ||||| |||||||||||||||||  ||| ||||||  ||||||||    ||||   UAAAUCUCAUAAUUUGUAUCU   UUAU UUUUG  UAAAGUAUU    C  GAUUA GCGCUCUGCUUAGAAAA  UUG AUUAAU  GGUACUAA    UUGU        G AU                     AAU    G     UG         GGAA CU     A                 -C   U      GU        ---A    UACACUAC
Stem-loop sequence	AUUUGGAGUAUUGAAUAUAGACUAAUAAAAAAUUAAUUUCAUAAAUAAGAGUUAAUCCGUGAGACGAAUUUUUUAAGACUAAUUAAUCUAUGAUUAUUAAAAGUUUACUUUAGCAUCACAUUGUUAAAUCAUGGUGUAAUUAUGUUCAAAAGAUUCGUCUCGCGAAUUAGUCCAAGGUUAUGAAAUGUGUUUUGUAUUUAAUCUAUGUUUAAUACUCUAAAUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242281.1	ncRNA:24   AUCAGAUAUAAGUUAUGAGGUUUA   1   ||||||||=||=|||||||||||| targets:1804   UAGUCUAUGUUUAAUACUCCAAAU   1827 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075189D01, full insert sequence	NA	coding protein	psRNATarget
CT830949.1	ncRNA:24   AUCAGAUAUAAGUUAUGAGGUUUA   1   ||||||||*|||||||||=||||| targets:958   UAGUCUAUUUUCAAUACUUCAAAU   981 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI219H14, full insert sequence	NA	coding protein	psRNATarget
CT833487.1	ncRNA:24   AUCAGAUAUAAGUUAUGAGGUUUA   1   ||||||||*|||||||||=||||| targets:964   UAGUCUAUUUUCAAUACUUCAAAU   987 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI228J03, full insert sequence	NA	coding protein	psRNATarget
AK240978.1	ncRNA:24   AUCAGAUAUAAGUUAUGAGGUUUA   1   ||*|||||=||=|||||||||||| targets:553   UAAUCUAUGUUUAAUACUCCAAAU   576 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065048J02, full insert sequence	NA	coding protein	psRNATarget
AK103177.1	ncRNA:24   AUCAGAUAUAAGUUAUGAGGUUUA   1   ||||*|||=||=|||||||||||| targets:1376   UAGUGUAUGUUUAAUACUCCAAAU   1399 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033121H17, full insert sequence	NA	coding protein	psRNATarget
XM_015788312.1	ncRNA:24   AUCAGAUAUAAGUUAUGAGGUUUA   1   ||||*|||=||=|||||||||||| targets:1732   UAGUGUAUGUUUAAUACUCCAAAU   1755 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group serine/arginine-rich splicing factor SR45a (LOC4342102), transcript variant X1, mRNA	serine/arginine-rich splicing factor SR45a(LOC4342102)	coding protein	psRNATarget
AK073850.1	ncRNA:24   AUCAGAUAUAAGUUAUGAGGUUUA   1   ||||*|||=||=|||||||||||| targets:1715   UAGUGUAUGUUUAAUACUCCAAAU   1738 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033073F11, full insert sequence	NA	coding protein	psRNATarget