Search result

BaseInfo

ncRNA ID	novel_osa_miR2545
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:21105580-21105648 [+]
Reference genome	IRGSP-1.0
Source	SRR1849775
Length	22
Mature sequence(if miRNA)	1 - AUUGCCAAUAUUCAUAUAAAUG - 22
Stem-loop(if miRNA)	--AUU    A          A        AU  GU      GCCA UAUUCAUAUA AUGUUAAU  AU  C      |||| |||||||||| ||||||||  ||      CGGU AUAAGUAUAU UACAAUUA  UA  U CGUAU    -          C        CU  GA
Stem-loop sequence	AUUGCCAAUAUUCAUAUAAAUGUUAAUAUAUGUCUAGAUUCAUUAACAUCUAUAUGAAUAUGGCUAUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT836499.1	ncRNA:22   GUAAAUAUACUUAUAACCGUUA   1   |||*|||||||||||||||||| targets:552   CAUAUAUAUGAAUAUUGGCAAU   573 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA014C07, full insert sequence	NA	coding protein	psRNATarget
XM_015786027.1	ncRNA:22   GUAAAUAUACUUAUAACCGUUA   1   |||*|||||||||||*|||||| targets:4314   CAUCUAUAUGAAUAUGGGCAAU   4335 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget
AK288429.1	ncRNA:22   GUAAAUAUACUUAUAACCGUUA   1   |||*|||||||||||*|||||| targets:2545   CAUCUAUAUGAAUAUGGGCAAU   2566 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090033C09, full insert sequence	NA	coding protein	psRNATarget
AK241537.1	ncRNA:22   GUAAAUAUACUUAUAACCGUUA   1   |||*|||||||||||*|||||| targets:897   CAUCUAUAUGAAUAUGGGCAAU   918 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065173J04, full insert sequence	NA	coding protein	psRNATarget
CT836330.1	ncRNA:22   GUAAAUAUACUUAUAACCGUUA   1   |||*|||||||||||*|||||| targets:895   CAUCUAUAUGAAUAUGGGCAAU   916 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN072K19, full insert sequence	NA	coding protein	psRNATarget
CT836259.1	ncRNA:22   GUAAAUAUACUUAUAACCGUUA   1   =||*|||||||||||*|||||| targets:1016   UAUCUAUAUGAAUAUGGGCAAU   1037 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115E20, full insert sequence	NA	coding protein	psRNATarget