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BaseInfo

ncRNA ID	novel_osa_miR2540
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:29015989-29016165 [-]
Reference genome	IRGSP-1.0
Source	SRR1849775;SRR2857735
Length	24
Mature sequence(if miRNA)	154 - AUAUUUUGCUUGCACUGUUUGACC - 177
Stem-loop(if miRNA)	--        C                   A                ---  G  U   -UAUUUAUUUUAU     A    CUU    AU   AUAUUUUG UUGCACUGUUUGACCAUUC UCUUAUUCAAAAAAAU   UG AA UAU             UUGUG CUUA   UAUU  C   |||||||| ||||||||||||||||||| ||||||||||||||||   || || |||             ||||| ||||   ||||   UAUAAAAC AACGUGACAAACUGGUGAG AGAAUAAGUUUUUUUA   AC UU AUA             AAUAC GAAU   AUGA  C AC        A                   C                AAC  G  U   UUUUUUGCUUUUC     -    UUU    AA
Stem-loop sequence	AUAUUUUGCUUGCACUGUUUGACCAUUCAUCUUAUUCAAAAAAAUUGGAAUUAUUAUUUAUUUUAUUUGUGACUUACUUUAUUAUCCAAAGUAUUUUAAGCAUAACUUUUCGUUUUUUAUAUUUGCACAAAUUUUUUUGAAUAAGACGAGUGGUCAAACAGUGCAAACAAAAUAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288203.1	ncRNA:24   CCAGUUUGUCACGUUCGUUUUAUA   1   |||||||||||||||||||||||| targets:1709   GGUCAAACAGUGCAAGCAAAAUAU   1732 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence	NA	coding protein	psRNATarget
AK068624.1	ncRNA:24   CCAGUUUGUCACGUUCGUUUUAUA   1   ||||||||||||||||||||||=| targets:191   GGUCAAACAGUGCAAGCAAAAUGU   214 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013153F11, full insert sequence	NA	coding protein	psRNATarget
AK066510.1	ncRNA:24   CCAGUUUGUCACGUUCGUUUUAUA   1   ||||||||||||||||||||||=| targets:1430   GGUCAAACAGUGCAAGCAAAAUGU   1453 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013068L16, full insert sequence	NA	coding protein	psRNATarget
AK289150.1	ncRNA:24   CCAGUUUGUCACGUUCGUUUUAUA   1   |||=||||||||||||||||||=| targets:2735   GGUUAAACAGUGCAAGCAAAAUGU   2758 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090099O03, full insert sequence	NA	coding protein	psRNATarget
AK065951.1	ncRNA:24   CCAGUUUGUCACGUUCGUUUUAUA   1   |||||||||*|||||*|||||||| targets:1441   GGUCAAACAAUGCAACCAAAAUAU   1464 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013045C05, full insert sequence	NA	coding protein	psRNATarget
XM_015755797.1	ncRNA:24   CCAGUUUGUCACGUUCGUUUUAUA   1   ***==|||||||||||*||||||| targets:1612   UAAUGAACAGUGCAAGAAAAAUAU   1635 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347865 (LOC4347865), transcript variant X3, mRNA	uncharacterized LOC4347865(LOC4347865)	coding protein	psRNATarget