| ncRNA ID | ath-miR841a-5p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr4:7885251-7885462 [-] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 143 - UACGAGCCACUUGAAACUGAA - 163 |
| Stem-loop(if miRNA) |
G CA U -GC A U A U G U C G CAAUAUC UAUAAAAUUUUAUCA CACCAA C ACUAUGU AGA ACUCUG UCUU AGUUGC UGUGAAUACGA CCACU GAAA UGAAA AAACAAAGAAA AG A |||||| | ||||||| ||| |||||| |||| |||||| ||||||||||| ||||| |||| ||||| ||||||||||| || GUGGUU G UGGUACA UCU UGAGAU AGAA UCAACG ACACUUAUGCU GGUGA CUUU ACUUU UUUGUUUCUUU GU A - CA C ACA A C C U G U A A ----AAA AAAAAACAUCAUAUU |
| Stem-loop sequence | GCACCAACACUACUAUGUGCAGAAACUCUGUUCUUAAGUUGCUUGUGAAUACGAGCCACUUGAAACUGAAAGAAACAAAGAAACAAUAUCAGUAUAAAAUUUUAUCAAAUUAUACUACAAAAAAUGAAAUUUCUUUGUUUAUUUCAAUUUCUAGUGGGUCGUAUUCACAUGCAACUCAAGACUAGAGUAUCUACAACAUGGUCGACUUGGUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_117431.1 |
|
2.0 | Arabidopsis thaliana histone H2A 4 (HTA4), partial mRNA | histone H2A 4(HTA4) | coding protein | psRNATarget | |||||||||
| NM_001203788.1 |
|
3.0 | Arabidopsis thaliana histone H2A 4 (HTA4), mRNA | histone H2A 4(HTA4) | coding protein | psRNATarget |
| 1 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 2 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |