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BaseInfo

ncRNA ID	novel_osa_miR2539
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:8782373-8782591 [+]
Reference genome	IRGSP-1.0
Source	SRR1849775;SRR2857733
Length	24
Mature sequence(if miRNA)	1 - AAGUUGUAGAACUCAUCAAGAGCU - 24
Stem-loop(if miRNA)	--        G    C       G   A                    C  C       C                   C                  --------          AAGUUGUA AACU AUCAAGA CUA AACUUUUAUUUUGGUCAUUU UU AUCCGAC AAGUGAUAGUAACAUUGUU AUAAAAUUUGCAUAUCUC        UUUUAUAA   |||||||| |||| ||||||| ||| |||||||||||||||||||| || ||||||| ||||||||||||||||||| ||||||||||||||||||        |||||||C   UUCAACAU UUGA UAGUUCU GAU UUGAAAAUAAGAUCAGUAAA AA UAGGCUG UUCGCUAUCAUUGUAACAA UGUUUUAAAUGUAUAGAG        AAAGUAUU GU        A    A       A   A                    A  C       U                   A                  CAUAUACC
Stem-loop sequence	AAGUUGUAGAACUCAUCAAGAGCUAAAACUUUUAUUUUGGUCAUUUCUUCAUCCGACCAAGUGAUAGUAACAUUGUUCAUAAAAUUUGCAUAUCUCUUUUAUAACUUAUGAAACCAUAUACGAGAUAUGUAAAUUUUGUAAACAAUGUUACUAUCGCUUUGUCGGAUCAAAAAAUGACUAGAAUAAAAGUUAUAGAUCUUGAUAAGUUAUACAACUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015764209.1	ncRNA:24   UCGAGAACUACUCAAGAUGUUGAA   1   ||*||||||||||||*|||||||| targets:58   AGAUCUUGAUGAGUUAUACAACUU   81 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X7, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764210.1	ncRNA:24   UCGAGAACUACUCAAGAUGUUGAA   1   ||*||||||||||||*|||||||| targets:58   AGAUCUUGAUGAGUUAUACAACUU   81 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X12, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764208.1	ncRNA:24   UCGAGAACUACUCAAGAUGUUGAA   1   ||*||||||||||||*|||||||| targets:58   AGAUCUUGAUGAGUUAUACAACUU   81 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X2, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764207.1	ncRNA:24   UCGAGAACUACUCAAGAUGUUGAA   1   ||*||||||||||||*|||||||| targets:58   AGAUCUUGAUGAGUUAUACAACUU   81 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X1, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
CT831299.1	ncRNA:24   UCGAGAACUACUCAAGAUGUUGAA   1   ||*|||*||||||||||||||=|| targets:1245   AGAUCUCGAUGAGUUCUACAAUUU   1268 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA205E03, full insert sequence	NA	coding protein	psRNATarget
CT831299.1	ncRNA:24   UCG-AGAACUACUCAAGAUGUUGAA   1   *||-|||*|||*||||||||||||| targets:1098   UGCAUCUCGAUAAGUUCUACAACUU   1122 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA205E03, full insert sequence	NA	coding protein	psRNATarget
AK121156.1	ncRNA:24   UCGAGAACUACUCAAGAUGUUGAA   1   |**||||||||||||*|||||||| targets:128   AAAUCUUGAUGAGUUAUACAACUU   151 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023079A20, full insert sequence	NA	coding protein	psRNATarget
AK121156.1	ncRNA:24   UCGAGAACUACUCAAGAUGUUGAA   1   ||*|||**||*||||||||||||| targets:284   AGAUCUCAAUAAGUUCUACAACUU   307 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023079A20, full insert sequence	NA	coding protein	psRNATarget
AK107543.1	ncRNA:24   UCGAGAACUACUCAAGAUGUUGAA   1   ||*|*||||||||||*|||||||| targets:1333   AGAUGUUGAUGAGUUAUACAACUU   1356 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget