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BaseInfo

ncRNA ID	novel_osa_miR2538
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:6149436-6149563 [-]
Reference genome	IRGSP-1.0
Source	SRR1849775;SRR2040383;SRR2040388;SRR2040391
Length	24
Mature sequence(if miRNA)	105 - AAUACCAACUGGGACUAAAGAUCC - 128
Stem-loop(if miRNA)	--AA           A         -    U    U    C           CUACCAACC    - U     UACCAACUGGG CUAAAGAUC CCGG GAUC UUAG CCCGGUUGGUA         GAGA C A     ||||||||||| ||||||||| |||| |||| |||| |||||||||||         |||| |     GUGGUUGGCCC GAUUUCUAG GGCC CUAG AAUC GGGCCAACCAU         UUCU G A CAUC           C         U    -    U    A           -----UCAA    A A
Stem-loop sequence	AAUACCAACUGGGACUAAAGAUCCCGGUGAUCUUUAGCCCCGGUUGGUACUACCAACCGAGACUAAAGAUCUUAACUUACCAACCGGGACUAAUGAUCCCGGUGAUCUUUAGCCCCGGUUGGUGCUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK121178.1	ncRNA:24   CCUAGAAAUCAGGGUCAACCAUAA   1   *|||||||||||||=||||||||| targets:1907   CGAUCUUUAGUCCCGGUUGGUAUU   1930 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   CCUAGAAAUCAGGGUCAACCAUAA   1   **||||||||||||=||||||||* targets:928   UAAUCUUUAGUCCCGGUUGGUAUG   951 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
XM_015755884.1	ncRNA:24   CCUAGAAAUCAGGGUCAACCAUAA   1   **||||||||||||=||||||||* targets:1373   UUAUCUUUAGUCCCGGUUGGUAUA   1396 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
AK288799.1	ncRNA:24   CCUAGAAAUCAGGGUCAACCAUAA   1   **|*|||||||||||||||||=|| targets:3406   AAAACUUUAGUCCCAGUUGGUGUU   3429 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090070K11, full insert sequence	NA	coding protein	psRNATarget