Search result

BaseInfo

ncRNA ID	novel_osa_miR2535
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:6011689-6011845 [+]
Reference genome	IRGSP-1.0
Source	SRR1849775
Length	24
Mature sequence(if miRNA)	134 - ACUCAAGGACCGUAGAAUUGCUCU - 157
Stem-loop(if miRNA)	--AU           A       G  A               UUU   C  U      -      ---            C     CAAUUUUACGG CCUUGAG AG UACCAUGAGGUACCA   UUU UA UGUAAA UUUGGU   ACCUCGUGGUAC U     ||||||||||| ||||||| || |||||||||||||||   ||| || |||||| ||||||   ||||||||||||     GUUAAGAUGCC GGAACUC UC AUGGUACUCCAUGGU   AAA AU ACAUUU AAACCA   UGGAGUAUCAUG A UCUC           A       A  C               UUU   -  C      U      UGG            G
Stem-loop sequence	AUCAAUUUUACGGACCUUGAGGAGAUACCAUGAGGUACCAUUUUUUCUAUUGUAAAUUUGGUACCUCGUGGUACCUAGGUACUAUGAGGUGGUACCAAAUUUUACACUAAAAUUUUGGUACCUCAUGGUACCUACUCAAGGACCGUAGAAUUGCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288954.1	ncRNA:24   UCUCGUUAAGAUGCCAGGAACUCA   1   |||||||||=||||||=||||||| targets:3531   AGAGCAAUUUUACGGUUCUUGAGU   3554 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090083O05, full insert sequence	NA	coding protein	psRNATarget
XM_015779910.1	ncRNA:24   UCUCGUUAAGAUGCCAGGAACUCA   1   ||||=||||||||||||=|||||* targets:413   AGAGUAAUUCUACGGUCUUUGAGA   436 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pEARLI1-like lipid transfer protein 1 (LOC9272463), mRNA	pEARLI1-like lipid transfer protein 1(LOC9272463)	coding protein	psRNATarget
XM_015757723.1	ncRNA:24   UCUCGUUAAGAUGCCAGGAACUCA   1   ||||=||||||||||||=|||||* targets:422   AGAGUAAUUCUACGGUCUUUGAGG   445 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group TD and POZ domain-containing protein 4 (LOC9271695), mRNA	TD and POZ domain-containing protein 4(LOC9271695)	coding protein	psRNATarget
XM_015786627.1	ncRNA:24   UCUCGUUAAGAUGCCAGGAACUCA   1   *|||||||||||=||||||||||* targets:534   UGAGCAAUUCUAUGGUCCUUGAGG   557 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281210 (LOC107281210), mRNA	uncharacterized LOC107281210(LOC107281210)	coding protein	psRNATarget
AK105471.1	ncRNA:24   UCUCGUUAAGAUGCCAGGAACUCA   1   ||||||||||||||||||||*||* targets:1224   AGAGCAAUUCUACGGUCCUUAAGG   1247 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-127-A01, full insert sequence	NA	coding protein	psRNATarget
XM_015765620.1	ncRNA:24   UCUCGUUAAGAUGCCAGGAACUCA   1   ||||||||||||||||||||*||* targets:1232   AGAGCAAUUCUACGGUCCUUAAGG   1255 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X1, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
XM_015765621.1	ncRNA:24   UCUCGUUAAGAUGCCAGGAACUCA   1   ||||||||||||||||||||*||* targets:1250   AGAGCAAUUCUACGGUCCUUAAGG   1273 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X3, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
AK072846.1	ncRNA:24   UCUCGUUAAGAUGCCAGGAACUCA   1   ||||||||||||||||||||*||* targets:1684   AGAGCAAUUCUACGGUCCUUAAGG   1707 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023143D15, full insert sequence	NA	coding protein	psRNATarget
XM_015790029.1	ncRNA:24   UCUCGUUAAGAUGCCAGGAACUCA   1   ||||||||||||||||||||*||* targets:2065   AGAGCAAUUCUACGGUCCUUAAGG   2088 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X1, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015790030.1	ncRNA:24   UCUCGUUAAGAUGCCAGGAACUCA   1   ||||||||||||||||||||*||* targets:2109   AGAGCAAUUCUACGGUCCUUAAGG   2132 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X2, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget