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BaseInfo

ncRNA ID	novel_osa_miR2534
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:1778125-1778210 [-]
Reference genome	IRGSP-1.0
Source	SRR1849775
Length	22
Mature sequence(if miRNA)	65 - AUUGUUCAUAUUCAUAUAGAUG - 86
Stem-loop(if miRNA)	--                  G             UAAAU   CA   AUUGUUCAUAUUCAUAUA AUGUUAAUGAAUC     ACA  U   |||||||||||||||||| |||||||||||||     |||   UAACAGGUGUAAGUAUAU UACAAUUACUUAG     UGU  A CA                  A             --UUC   AU
Stem-loop sequence	AUUGUUCAUAUUCAUAUAGAUGUUAAUGAAUCUAAAUACACAUAUAUGUCUUGAUUCAUUAACAUAUAUAUGAAUGUGGACAAUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015763482.1	ncRNA:22   GUAGAUAUACUUAUACUUGUUA   1   ||||||||||||||||=||||| targets:1701   CAUCUAUAUGAAUAUGGACAAU   1722 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352431 (LOC4352431), mRNA	uncharacterized LOC4352431(LOC4352431)	coding protein	psRNATarget
AK108630.1	ncRNA:22   GUAGAUAUACUUAUACUUGUUA   1   ||||||||||||||||=||||| targets:1667   CAUCUAUAUGAAUAUGGACAAU   1688 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-147-F01, full insert sequence	NA	coding protein	psRNATarget
CT835788.1	ncRNA:22   GUAGAUAUACUUAUACUUGUUA   1   ||||||||||=||||||||||| targets:1246   CAUCUAUAUGGAUAUGAACAAU   1267 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN020A08, full insert sequence	NA	coding protein	psRNATarget
XM_015758483.1	ncRNA:22   GUAGAUAUACUUAUACUUGUUA   1   |||||||||||||||||=|||| targets:1082   CAUCUAUAUGAAUAUGAGCAAU   1103 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277697 (LOC107277697), transcript variant X1, mRNA	uncharacterized LOC107277697(LOC107277697)	coding protein	psRNATarget
XM_015785143.1	ncRNA:22   GUAGAUAUACUUAUACUUGUUA   1   |=||||||||||||||=||||* targets:1791   CGUCUAUAUGAAUAUGGACAAC   1812 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266451 (LOC9266451), mRNA	uncharacterized LOC9266451(LOC9266451)	coding protein	psRNATarget
XM_015755201.1	ncRNA:22   GUAGAUAUACUUAUACUUGUUA   1   ||||||||*||||||||=|||| targets:1152   CAUCUAUACGAAUAUGAGCAAU   1173 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1 (LOC9270429), transcript variant X2, mRNA	cinnamoyl-CoA reductase 1(LOC9270429)	coding protein	psRNATarget
XM_015755199.1	ncRNA:22   GUAGAUAUACUUAUACUUGUUA   1   ||||||||*||||||||=|||| targets:1149   CAUCUAUACGAAUAUGAGCAAU   1170 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1 (LOC9270429), transcript variant X1, mRNA	cinnamoyl-CoA reductase 1(LOC9270429)	coding protein	psRNATarget
XM_015761672.1	ncRNA:22   GUAGAUAUACUUAUACUUGUUA   1   ||||*|||||||||||||*||| targets:5708   CAUCAAUAUGAAUAUGAAAAAU   5729 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group regulatory-associated protein of TOR 2 (LOC9266997), transcript variant X1, mRNA	regulatory-associated protein of TOR 2(LOC9266997)	coding protein	psRNATarget
XM_015761673.1	ncRNA:22   GUAGAUAUACUUAUACUUGUUA   1   ||||*|||||||||||||*||| targets:5704   CAUCAAUAUGAAUAUGAAAAAU   5725 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group regulatory-associated protein of TOR 2 (LOC9266997), transcript variant X2, mRNA	regulatory-associated protein of TOR 2(LOC9266997)	coding protein	psRNATarget
AK109758.1	ncRNA:22   GUAGAUAUACUUAUACUUGUUA   1   ||||*|||||||||||||*||| targets:1718   CAUCAAUAUGAAUAUGAAAAAU   1739 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-146-G06, full insert sequence	NA	coding protein	psRNATarget
AK288811.1	ncRNA:22   GUAGAUAUACUUAUACUUGUUA   1   ||||*|||||||||||||*||| targets:1402   CAUCAAUAUGAAUAUGAAAAAU   1423 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090072B06, full insert sequence	NA	coding protein	psRNATarget
AK099623.1	ncRNA:22   GUAGAUAUACUUAUACUUGUUA   1   ||||*|||||||||||||*||| targets:159   CAUCAAUAUGAAUAUGAAAAAU   180 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013053G12, full insert sequence	NA	coding protein	psRNATarget
XM_015777391.1	ncRNA:22   GUAGAUAUACUUAUACUUGUUA   1   ||||*|||||||||||||*||| targets:1359   CAUCAAUAUGAAUAUGAAAAAU   1380 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333864 (LOC4333864), mRNA	uncharacterized LOC4333864(LOC4333864)	coding protein	psRNATarget
CT832810.1	ncRNA:22   GUAGAUAUACUUAUACUUGUUA   1   ||||*|||||||||||||*||| targets:1106   CAUCAAUAUGAAUAUGAAAAAU   1127 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121K07, full insert sequence	NA	coding protein	psRNATarget
AK066216.1	ncRNA:22   GUAGAUAUACUUAUACUUGUUA   1   ||||*|||||||||||||*||| targets:1107   CAUCAAUAUGAAUAUGAAAAAU   1128 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013052J02, full insert sequence	NA	coding protein	psRNATarget