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BaseInfo

ncRNA ID	novel_osa_miR2533
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:5226320-5226480 [-]
Reference genome	IRGSP-1.0
Source	SRR1849775;SRR2040380;SRR2040383;SRR2040385;SRR2040388;SRR2040395;SRR2040401;SRR2040404;SRR2040409;SRR2857731;SRR3234043
Length	24
Mature sequence(if miRNA)	1 - AAACGUUGUAAGCAAAAACUCAAA - 24
Stem-loop(if miRNA)	--         -        A     C                UUUUUUC      C    AUAAAAAAUGAAA       CU   UGAGUUUUU CUUACAAC UUUGA CACUCGUCUUAUUCAA       UUUUUG AAAU             AUUUGUG  U   ||||||||| |||||||| ||||| ||||||||||||||||       |||||| ||||             |||||||  A   ACUCAAAAA GAAUGUUG AAACU GUGAGCGGAAUAAGUU       AAAAAC UUUA             UAAACAC  A AA         C        C     A                ----UUU      -    AUAAUAAAUAAAA       UA
Stem-loop sequence	UGAGUUUUUCUUACAACAUUUGACCACUCGUCUUAUUCAAUUUUUUCUUUUUGCAAAUAUAAAAAAUGAAAAUUUGUGCUUAAAUCACAAAUAAAAUAAAUAAUAAUUUCAAAAAUUUUUGAAUAAGGCGAGUGAUCAAACGUUGUAAGCAAAAACUCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015763075.1	ncRNA:24   AAACUCAAAAACGAAUGUUGCAAA   1   |||||||||||||||||||||||| targets:2835   UUUGAGUUUUUGCUUACAACGUUU   2858 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA	protein trichome birefringence-like 28(LOC4327430)	coding protein	psRNATarget
XM_015767968.1	ncRNA:24   AAACUCAAAAACGAAUGUUGCAAA   1   ||||||||||||=||||||||||| targets:1431   UUUGAGUUUUUGUUUACAACGUUU   1454 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group altered inheritance rate of mitochondria protein 25 (LOC4328840), mRNA	altered inheritance rate of mitochondria protein 25(LOC4328840)	coding protein	psRNATarget
AK111038.1	ncRNA:24   AAACUCAAAAACGAAUGUUGCAAA   1   |||||||||||||||=|||||||| targets:485   UUUGAGUUUUUGCUUGCAACGUUU   508 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-175-A10, full insert sequence	NA	coding protein	psRNATarget
CT834713.1	ncRNA:24   AAACUCAAAAACGAAUGUUGCAAA   1   |||*|||||||||||=|||||||| targets:487   UUUAAGUUUUUGCUUGCAACGUUU   510 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA008G23, full insert sequence	NA	coding protein	psRNATarget
AK288319.1	ncRNA:24   AAACUCAAAAACGAAUGUUGCAAA   1   |||*||||||||||||||||*||| targets:1699   UUUUAGUUUUUGCUUACAACUUUU   1722 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence	NA	coding protein	psRNATarget
JB164127.1	ncRNA:24   AAACUCAAAAACGAAUGUUGCAAA   1   ||||||*|||||*||||||||||| targets:3   UUUGAGCUUUUGAUUACAACGUUU   26 Target Full Sequence	2.5	Sequence 1791 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235796.1	ncRNA:24   AAACUCAAAAACGAAUGUUGCAAA   1   ||||||*|||||*||||||||||| targets:3   UUUGAGCUUUUGAUUACAACGUUU   26 Target Full Sequence	2.5	Sequence 1791 from Patent EP2985353	NA	coding protein	psRNATarget
HI403666.1	ncRNA:24   AAACUCAAAAACGAAUGUUGCAAA   1   ||||||*|||||*||||||||||| targets:3   UUUGAGCUUUUGAUUACAACGUUU   26 Target Full Sequence	2.5	Sequence 1791 from Patent EP2074227	NA	coding protein	psRNATarget