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BaseInfo

ncRNA ID	novel_osa_miR2520
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:6971352-6971416 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1556014
Length	21
Mature sequence(if miRNA)	45 - CGGCCGUCGGGAGAGGGGGCG - 65
Stem-loop(if miRNA)	--       CCA              -GG    C   UCCCCUC   UCCGGCGGCCGGUG   GCCG A   |||||||   ||||||||||||||   ||||   GGGGGAG   GGGCUGCCGGCCGC   CGGC G GC       --A              GGA    G
Stem-loop sequence	UCCCCUCCCAUCCGGCGGCCGGUGGGGCCGCAGGCGGCAGGCGCCGGCCGUCGGGAGAGGGGGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK241271.1	ncRNA:21   GCGGGGGAGA-GGGCUGCCGGC   1   ||||||||||-||||||||||| targets:2758   CGCCCCCUCUUCCCGACGGCCG   2779 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J065132H24, full insert sequence	NA	coding protein	psRNATarget
XM_015776983.1	ncRNA:21   GCGGGGGAGAGGGCUGCCGGC   1   |*||=||||||||||*||||| targets:164   CUCCUCCUCUCCCGAAGGCCG   184 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327113 (LOC4327113), transcript variant X1, mRNA	uncharacterized LOC4327113(LOC4327113)	coding protein	psRNATarget
XM_015777068.1	ncRNA:21   GCGGGGGAGAGGGCUGCCGGC   1   |*||=||||||||||*||||| targets:163   CUCCUCCUCUCCCGAAGGCCG   183 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327113 (LOC4327113), transcript variant X2, mRNA	uncharacterized LOC4327113(LOC4327113)	coding protein	psRNATarget
AK105250.1	ncRNA:21   GCGGGGGAGAGGGCUGCCGGC   1   |*||=||||||||||*||||| targets:114   CUCCUCCUCUCCCGAAGGCCG   134 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-114-C08, full insert sequence	NA	coding protein	psRNATarget