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BaseInfo

ncRNA ID	novel_osa_miR2519
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:6822803-6822970 [-]
Reference genome	IRGSP-1.0
Source	SRR1849775
Length	22
Mature sequence(if miRNA)	147 - UUUUUGUCAAACGUUUGACCCU - 168
Stem-loop(if miRNA)	-      -    A         C     C          AA   A     -UUAACAUU     -UA UG  A     UUCAUCAU  UUUUUG UCAA CGUUUGACC UUCGU UUAUUCAAAA  UUU UGUAA         UAUUU   U  UG CUUGA        C  |||||| |||| ||||||||| ||||| ||||||||||  ||| |||||         |||||   |  || |||||  AAAAGC AGUU GCAAACUGG AAGUA AAUAAGUUUU  AAA ACGUU         AUAAA   A  AC GAAUU        A G      U    -         U     A          AA   C     UAUACUUUU     UAC GU  -     UCUUAUAA
Stem-loop sequence	UUUUUGUCAAACGUUUGACCCUUCGUCUUAUUCAAAAAAUUUAUGUAAUUAACAUUUAUUUUAUUGUGACUUGAUUCAUCAUCAAAUAUUCUUUAAGCAUGACAUAAAUAUUUUCAUAUUUGCACAAAAAUUUUGAAUAAAAUGAAUGGUCAAACGUUGAUCGAAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835080.1	ncRNA:22   UCCCAGUUUGCAAACUGUUUUU   1   |*|||||||||||||*|||||| targets:1132   AAGGUCAAACGUUUGUCAAAAA   1153 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN071I07, full insert sequence	NA	coding protein	psRNATarget
AK100009.1	ncRNA:22   UCCCAGUUUGCAAACUGUUUUU   1   |*||||||||||*||||||||| targets:799   AUGGUCAAACGUCUGACAAAAA   820 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
AK064773.1	ncRNA:22   UCCCAGUUUGCAAACUGUUUUU   1   |*||||||||||*||||||||| targets:2819   AUGGUCAAACGUCUGACAAAAA   2840 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
AK288290.1	ncRNA:22   UCCCAGUUUGCAAACUGUUUUU   1   |*|||=|||||||*|||||||| targets:1754   AUGGUUAAACGUUGGACAAAAA   1775 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090019D06, full insert sequence	NA	coding protein	psRNATarget