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BaseInfo

ncRNA ID	novel_osa_miR2517
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:20571587-20571675 [+]
Reference genome	IRGSP-1.0
Source	SRR1849775;SRR2040389;SRR2040390;SRR2098822;SRR1555751;SRR2098823;SRR2099568;SRR4407961;SRR4407962;SRR1556018;SRR1612403;SRR1612404;SRR1654490;SRR1654491
Length	21
Mature sequence(if miRNA)	69 - UUUUUCGUUACGAGAUGUAGA - 89
Stem-loop(if miRNA)	--    C C  C                 U     UG AUA  U U   UACA C CG AACGAAAAAAACAAAUU GACUG  A   UA G U   |||| | || ||||||||||||||||| |||||  |   || |   AUGU G GC UUGCUUUUUUUGUUUAA UUGAU  U   AU C A AG    A A  A                 U     GU --G  - A
Stem-loop sequence	UACACCCCGCAACGAAAAAAACAAAUUUGACUGUGAAUAUAUGUUAACUAGUUGUAGUUUAAUUUGUUUUUUUCGUUACGAGAUGUAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT833231.1	ncRNA:21   AGAUGUAGAGCAUUGCUUUUU   1   |||||||||||*||||||||| targets:1188   UCUACAUCUCGCAACGAAAAA   1208 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA053D08, full insert sequence	NA	coding protein	psRNATarget
XM_015756961.1	ncRNA:21   AGAUGUAGAGCAUUGCUUUUU   1   |||||||||||*||||||||| targets:1184   UCUACAUCUCGCAACGAAAAA   1204 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347194 (LOC4347194), mRNA	uncharacterized LOC4347194(LOC4347194)	coding protein	psRNATarget
AK110839.1	ncRNA:21   AGAUGUAGAGCAUUGCUUUUU   1   |||||||||||*||||||||| targets:1186   UCUACAUCUCGCAACGAAAAA   1206 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-172-B04, full insert sequence	NA	coding protein	psRNATarget
XM_015792915.1	ncRNA:21   AGAUGUAGAGCAUUGCUUUUU   1   |||||||||||*||||||||| targets:1898   UCUACAUCUCGCAACGAAAAA   1918 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B1 (LOC4345896), transcript variant X1, mRNA	UDP-glycosyltransferase 89B1(LOC4345896)	coding protein	psRNATarget
HI404353.1	ncRNA:21   AGAUGUAGAGCAUUGCUUUUU   1   ||||=||||||*||||||||| targets:41   UCUAUAUCUCGCAACGAAAAA   61 Target Full Sequence	2.5	Sequence 2478 from Patent EP2074227	NA	coding protein	psRNATarget
JB164814.1	ncRNA:21   AGAUGUAGAGCAUUGCUUUUU   1   ||||=||||||*||||||||| targets:41   UCUAUAUCUCGCAACGAAAAA   61 Target Full Sequence	2.5	Sequence 2478 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236483.1	ncRNA:21   AGAUGUAGAGCAUUGCUUUUU   1   ||||=||||||*||||||||| targets:41   UCUAUAUCUCGCAACGAAAAA   61 Target Full Sequence	2.5	Sequence 2478 from Patent EP2985353	NA	coding protein	psRNATarget