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BaseInfo

ncRNA ID	novel_osa_miR2516
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:2948488-2948642 [-]
Reference genome	IRGSP-1.0
Source	SRR1849775;SRR1849776;SRR2040384;SRR2040388;SRR2040393;SRR2040394;SRR2040395;SRR2040396;SRR2040397;SRR2040403;SRR2040404;SRR2040405;SRR2040408;SRR2040409;SRR2857728;SRR3123646;SRR3123648;SRR5351737;SRR5351738;SRR5351740;SRR5351742;SRR1738228;SRR1738235
Length	24
Mature sequence(if miRNA)	1 - AAGAUGAACGGUCAAAUAUUGGAC - 24
Stem-loop(if miRNA)	--    CG         CU       A     UUUUUUUAUAAUU     ---- U -   UGUUGUUAGAUGAUAAAAUAUGAU   CUAA  UUUGACUGU  GUCUUAU UGAAA             AGUAU    U U CAU                        U   ||||  |||||||||  ||||||| |||||             |||||    | | |||                        A   GGUU  AAACUGGCA  UAGAAUA ACUUU             AAUAC    U U AAU                        A CA    AU         AG       A     ----------UUU     UUUU - U   UUUUCUAUUCAGUGCGUAUUUCAU
Stem-loop sequence	CUAACGUUUGACUGUCUGUCUUAUAUGAAAUUUUUUUAUAAUUAGUAUUUUCAUUGUUGUUAGAUGAUAAAAUAUGAUUAAUACUUUAUGCGUGACUUAUCUUUUUAAUUUUUUUCAUAAUUUUUUCAAAUAAGAUGAACGGUCAAAUAUUGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779567.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   ||||||*||||||||||||=|||| targets:1946   GUCCAACAUUUGACCGUUCGUCUU   1969 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group beta-fructofuranosidase, insoluble isoenzyme 3 (LOC4335789), mRNA	beta-fructofuranosidase, insoluble isoenzyme 3(LOC4335789)	coding protein	psRNATarget
AK120779.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   ||||||*||||||||||||=|||| targets:1953   GUCCAACAUUUGACCGUUCGUCUU   1976 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023009M11, full insert sequence	NA	coding protein	psRNATarget
AK288164.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   |||=||*||||||||||*|||||| targets:1681   GUCUAACAUUUGACCGUCCAUCUU   1704 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090002E02, full insert sequence	NA	coding protein	psRNATarget
AK288202.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   |||=||*||||||||||*|||||| targets:1681   GUCUAACAUUUGACCGUCCAUCUU   1704 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090008J03, full insert sequence	NA	coding protein	psRNATarget
AK288575.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   ****|||||||||||||||=|||| targets:3561   UAAAAAUAUUUGACCGUUCGUCUU   3584 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090049A09, full insert sequence	NA	coding protein	psRNATarget
AK288782.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   **|*|||=|||||||||||=|||| targets:1076   AGCAAAUGUUUGACCGUUCGUCUU   1099 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090069D21, full insert sequence	NA	coding protein	psRNATarget
AK288960.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   ****|||=|||||||||||=|||| targets:240   UAAAAAUGUUUGACCGUUCGUCUU   263 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090084F05, full insert sequence	NA	coding protein	psRNATarget
AK242125.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   ****|||=|||||||||||=|||| targets:1860   AAAAAAUGUUUGACCGUUCGUCUU   1883 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075148C03, full insert sequence	NA	coding protein	psRNATarget
XM_015792994.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   ****|||=|||||||||||=|||| targets:1863   AAAAAAUGUUUGACCGUUCGUCUU   1886 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative serine/threonine-protein kinase-like protein CCR3 (LOC4345414), mRNA	putative serine/threonine-protein kinase-like protein CCR3(LOC4345414)	coding protein	psRNATarget