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BaseInfo

ncRNA ID novel_osa_miR2493
Species Oryza sativa
Class miRNA
Genome position Chr2:24107585-24107675 [+]
Reference genome IRGSP-1.0
Source SRR1555746;SRR1555751;SRR2099567;SRR1556014;SRR4407954;SRR1556018
Length 24
Mature sequence(if miRNA) 68 - UGAUUUUUUUGGGACGGAGGGAGU - 91
Stem-loop(if miRNA) --      UA     C           C   AG  G    UACA  UU
  UCCCUU  UCUCA GAAAAAUCAAU UAG  UU AGAG    GG  A
  ||||||  ||||| ||||||||||| |||  || ||||    ||
  AGGGAG  AGGGU UUUUUUAGUUA AUC  AA UCUC    CC  U
UG      GC     -           U   CU  -    ---C  UA
Stem-loop sequence UCCCUUUAUCUCACGAAAAAUCAAUCUAGAGUUGAGAGUACAGGUUAUAUCCCCUCUAAUCCUAUAUUGAUUUUUUUGGGACGGAGGGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015778888.1
ncRNA:24   UGAGGGAGGCAGGGU-UUUUUUAGU   1
  |||||||||||||||-|||||||||
targets:1660   ACUCCCUCCGUCCCAUAAAAAAUCA   1684

3.0 PREDICTED: Oryza sativa Japonica Group actin-related protein 2/3 complex subunit 2B (LOC4336383), transcript variant X2, mRNA actin-related protein 2/3 complex subunit 2B(LOC4336383) coding protein psRNATarget
XM_015778887.1
ncRNA:24   UGAGGGAGGCAGGGU-UUUUUUAGU   1
  |||||||||||||||-|||||||||
targets:1669   ACUCCCUCCGUCCCAUAAAAAAUCA   1693

3.0 PREDICTED: Oryza sativa Japonica Group actin-related protein 2/3 complex subunit 2B (LOC4336383), transcript variant X1, mRNA actin-related protein 2/3 complex subunit 2B(LOC4336383) coding protein psRNATarget
XM_015778889.1
ncRNA:24   UGAGGGAGGCAGGGU-UUUUUUAGU   1
  |||||||||||||||-|||||||||
targets:1778   ACUCCCUCCGUCCCAUAAAAAAUCA   1802

3.0 PREDICTED: Oryza sativa Japonica Group actin-related protein 2/3 complex subunit 2B (LOC4336383), transcript variant X3, mRNA actin-related protein 2/3 complex subunit 2B(LOC4336383) coding protein psRNATarget
LQ236154.1
ncRNA:24   UGAGGGAGGCAGGGUUUUUUUAGU   1
  |||||||||||||||||||||*|*
targets:5   ACUCCCUCCGUCCCAAAAAAAACC   28

2.5 Sequence 2149 from Patent EP2985353 NA coding protein psRNATarget
HI404024.1
ncRNA:24   UGAGGGAGGCAGGGUUUUUUUAGU   1
  |||||||||||||||||||||*|*
targets:5   ACUCCCUCCGUCCCAAAAAAAACC   28

2.5 Sequence 2149 from Patent EP2074227 NA coding protein psRNATarget
JB164485.1
ncRNA:24   UGAGGGAGGCAGGGUUUUUUUAGU   1
  |||||||||||||||||||||*|*
targets:5   ACUCCCUCCGUCCCAAAAAAAACC   28

2.5 Sequence 2149 from Patent EP2559767 NA coding protein psRNATarget
LQ236516.1
ncRNA:24   UGAGGGAGGCAGGGUUUUUUUAGU   1
  |||||||||||||||||||||*|*
targets:5   ACUCCCUCCGUCCCAAAAAAAACC   28

2.5 Sequence 2511 from Patent EP2985353 NA coding protein psRNATarget
HI404386.1
ncRNA:24   UGAGGGAGGCAGGGUUUUUUUAGU   1
  |||||||||||||||||||||*|*
targets:5   ACUCCCUCCGUCCCAAAAAAAACC   28

2.5 Sequence 2511 from Patent EP2074227 NA coding protein psRNATarget
JB164847.1
ncRNA:24   UGAGGGAGGCAGGGUUUUUUUAGU   1
  |||||||||||||||||||||*|*
targets:5   ACUCCCUCCGUCCCAAAAAAAACC   28

2.5 Sequence 2511 from Patent EP2559767 NA coding protein psRNATarget
HI404352.1
ncRNA:24   UGAGGGAGGCAGGGUUUUUUUAGU   1
  |||||||||||||||||||||*|*
targets:5   ACUCCCUCCGUCCCAAAAAAAACC   28

2.5 Sequence 2477 from Patent EP2074227 NA coding protein psRNATarget
JB164813.1
ncRNA:24   UGAGGGAGGCAGGGUUUUUUUAGU   1
  |||||||||||||||||||||*|*
targets:5   ACUCCCUCCGUCCCAAAAAAAACC   28

2.5 Sequence 2477 from Patent EP2559767 NA coding protein psRNATarget
LQ236482.1
ncRNA:24   UGAGGGAGGCAGGGUUUUUUUAGU   1
  |||||||||||||||||||||*|*
targets:5   ACUCCCUCCGUCCCAAAAAAAACC   28

2.5 Sequence 2477 from Patent EP2985353 NA coding protein psRNATarget
LQ236336.1
ncRNA:24   UGAGGGAGGCAGGGUUUUUUUAGU   1
  |||||||||||||||||||||*|*
targets:5   ACUCCCUCCGUCCCAAAAAAAACC   28

2.5 Sequence 2331 from Patent EP2985353 NA coding protein psRNATarget
HI404206.1
ncRNA:24   UGAGGGAGGCAGGGUUUUUUUAGU   1
  |||||||||||||||||||||*|*
targets:5   ACUCCCUCCGUCCCAAAAAAAACC   28

2.5 Sequence 2331 from Patent EP2074227 NA coding protein psRNATarget
JB164667.1
ncRNA:24   UGAGGGAGGCAGGGUUUUUUUAGU   1
  |||||||||||||||||||||*|*
targets:5   ACUCCCUCCGUCCCAAAAAAAACC   28

2.5 Sequence 2331 from Patent EP2559767 NA coding protein psRNATarget
AK064014.1
ncRNA:24   UGAGGGAGGCAGGGUUUUUUUAGU   1
  |||||||||*|||||||||||||*
targets:393   ACUCCCUCCAUCCCAAAAAAAUCC   416

2.0 Oryza sativa Japonica Group cDNA clone:001-124-H04, full insert sequence NA coding protein psRNATarget
AK240724.1
ncRNA:24   UGAGGGAGGCAGGGUU-UUUUUAGU   1
  ||||*|||||||||||-||||||||
targets:1918   ACUCACUCCGUCCCAAUAAAAAUCA   1942

3.0 Oryza sativa Japonica Group cDNA, clone: J043027L06, full insert sequence NA coding protein psRNATarget
HI403663.1
ncRNA:22   AGGGAGGCAGGGUUUU-UUUAGU   1
  ||||||||||||||||-||||||
targets:1   UCCCUCCGUCCCAAAAUAAAUCA   23

3.0 Sequence 1788 from Patent EP2074227 NA coding protein psRNATarget
LQ235793.1
ncRNA:22   AGGGAGGCAGGGUUUU-UUUAGU   1
  ||||||||||||||||-||||||
targets:1   UCCCUCCGUCCCAAAAUAAAUCA   23

3.0 Sequence 1788 from Patent EP2985353 NA coding protein psRNATarget
JB164124.1
ncRNA:22   AGGGAGGCAGGGUUUU-UUUAGU   1
  ||||||||||||||||-||||||
targets:1   UCCCUCCGUCCCAAAAUAAAUCA   23

3.0 Sequence 1788 from Patent EP2559767 NA coding protein psRNATarget
HQ186282.1
ncRNA:24   UGAGGGAGGCAGGGUUUUUUUAGU   1
  |||*|||||||||||=|||||||*
targets:30   ACUGCCUCCGUCCCAGAAAAAUCU   53

2.5 Oryza sativa Japonica Group receptor-like protein (RLP65) mRNA, 5' UTR and complete cds NA coding protein psRNATarget
LQ235810.1
ncRNA:24   UGAGGGAGGCAGGGUUUUUUUAGU   1
  ||*||||||||||||||||||*|*
targets:5   ACACCCUCCGUCCCAAAAAAAACC   28

2.5 Sequence 1805 from Patent EP2985353 NA coding protein psRNATarget
JB164141.1
ncRNA:24   UGAGGGAGGCAGGGUUUUUUUAGU   1
  ||*||||||||||||||||||*|*
targets:5   ACACCCUCCGUCCCAAAAAAAACC   28

2.5 Sequence 1805 from Patent EP2559767 NA coding protein psRNATarget
HI403680.1
ncRNA:24   UGAGGGAGGCAGGGUUUUUUUAGU   1
  ||*||||||||||||||||||*|*
targets:5   ACACCCUCCGUCCCAAAAAAAACC   28

2.5 Sequence 1805 from Patent EP2074227 NA coding protein psRNATarget
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