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BaseInfo

ncRNA ID	novel_osa_miR2484
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:6788096-6788180 [-]
Reference genome	IRGSP-1.0
Source	SRR1849774;SRR2040403
Length	21
Mature sequence(if miRNA)	1 - UUUUUUCGUUACGAGAUGUAG - 21
Stem-loop(if miRNA)	--        C   A            A    ACAGCUAGUU   GCAUCUCG AAC AAAAAAUAAAUU AACU          A   |||||||| ||| |||||||||||| ||||          A   UGUAGAGC UUG UUUUUUGUUUAA UUGA          C GA        A   C            A    CACUUAUAUG
Stem-loop sequence	GCAUCUCGCAACAAAAAAAUAAAUUAAACUACAGCUAGUUAACGUAUAUUCACAGUUAAAUUUGUUUUUUCGUUACGAGAUGUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT833231.1	ncRNA:21   GAUGUAGAGCAUUGCUUUUUU   1   ||||||||||*|||||||||| targets:1189   CUACAUCUCGCAACGAAAAAA   1209 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA053D08, full insert sequence	NA	coding protein	psRNATarget
XM_015756961.1	ncRNA:21   GAUGUAGAGCAUUGCUUUUUU   1   ||||||||||*|||||||||| targets:1185   CUACAUCUCGCAACGAAAAAA   1205 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347194 (LOC4347194), mRNA	uncharacterized LOC4347194(LOC4347194)	coding protein	psRNATarget
AK110839.1	ncRNA:21   GAUGUAGAGCAUUGCUUUUUU   1   ||||||||||*|||||||||| targets:1187   CUACAUCUCGCAACGAAAAAA   1207 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-172-B04, full insert sequence	NA	coding protein	psRNATarget
XM_015792915.1	ncRNA:21   GAUGUAGAGCAUUGCUUUUUU   1   ||||||||||*|||||||||| targets:1899   CUACAUCUCGCAACGAAAAAA   1919 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B1 (LOC4345896), transcript variant X1, mRNA	UDP-glycosyltransferase 89B1(LOC4345896)	coding protein	psRNATarget
JB164814.1	ncRNA:21   GAUGUAGAGCAUUGCUUUUUU   1   |||=||||||*|||||||||| targets:42   CUAUAUCUCGCAACGAAAAAA   62 Target Full Sequence	2.5	Sequence 2478 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236483.1	ncRNA:21   GAUGUAGAGCAUUGCUUUUUU   1   |||=||||||*|||||||||| targets:42   CUAUAUCUCGCAACGAAAAAA   62 Target Full Sequence	2.5	Sequence 2478 from Patent EP2985353	NA	coding protein	psRNATarget
HI404353.1	ncRNA:21   GAUGUAGAGCAUUGCUUUUUU   1   |||=||||||*|||||||||| targets:42   CUAUAUCUCGCAACGAAAAAA   62 Target Full Sequence	2.5	Sequence 2478 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015762405.1	ncRNA:21   GAUGUAGAGCAUUGCUUUUUU   1   |*|||*||||*|||||||||| targets:766   CGACAACUCGCAACGAAAAAA   786 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance RPP13-like protein 4 (LOC4327629), transcript variant X2, mRNA	disease resistance RPP13-like protein 4(LOC4327629)	coding protein	psRNATarget
XM_015762434.1	ncRNA:21   GAUGUAGAGCAUUGCUUUUUU   1   |*|||*||||*|||||||||| targets:833   CGACAACUCGCAACGAAAAAA   853 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance RPP13-like protein 4 (LOC4327629), transcript variant X6, mRNA	disease resistance RPP13-like protein 4(LOC4327629)	coding protein	psRNATarget