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BaseInfo

ncRNA ID	novel_osa_miR2480
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:332645-332832 [+]
Reference genome	IRGSP-1.0
Source	SRR1849774
Length	21
Mature sequence(if miRNA)	168 - UUUGCAUGUCACUCAAAUGGU - 188
Stem-loop(if miRNA)	--              A             -          AA           -A       UUGA  UCCCCCCU   ---- CAACUGGCCUCC   CAUUUGAGUGACAU CAAACAACGAGGG AUCUCCCCUC  GGGAUCAAAAU  AUUUCCC    UC        CCA    G            U   |||||||||||||| ||||||||||||| ||||||||||  |||||||||||  |||||||    ||        |||    |            A   GUAAACUCACUGUA GUUUGUUGCUCCC UGGAGGGGAG  UCCUAGUUUUA  UGAGGGG    AG        CGU    C            G UG              C             C          -C           GG       UUAA  CCAUCUCC   AUAC CAUAUCUGGCAC
Stem-loop sequence	CAUUUGAGUGACAUACAAACAACGAGGGAUCUCCCCUCAAGGGAUCAAAAUAAUUUCCCUUGAUCUCCCCCCUCCAGCAACUGGCCUCCUAGCACGGUCUAUACCCAUAUGCCCUCUACCGAAAUUGGGGAGUGGAUUUUGAUCCUCGAGGGGAGGUCCCCUCGUUGUUUGCAUGUCACUCAAAUGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK106868.1	ncRNA:21   UGGUAAACUCACUGUACGUUU   1   ||||||||=|||||||||||| targets:1792   ACCAUUUGGGUGACAUGCAAA   1812 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-118-D05, full insert sequence	NA	coding protein	psRNATarget
XM_015772943.1	ncRNA:21   UGGUAAACUCACUGUACGUUU   1   ||=|||||||||=|||||||| targets:1264   ACUAUUUGAGUGGCAUGCAAA   1284 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group agmatine coumaroyltransferase-1 (LOC4331867), mRNA	agmatine coumaroyltransferase-1(LOC4331867)	coding protein	psRNATarget
AK069841.1	ncRNA:21   UGGUAAACUCACUGUACGUUU   1   |||||||*||||||||||||| targets:64   ACCAUUUAAGUGACAUGCAAA   84 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023031G23, full insert sequence	NA	coding protein	psRNATarget
XM_015762405.1	ncRNA:21   UGGUAAACUCACUGUACGUUU   1   *||=||||||||||=|||||| targets:922   CCCGUUUGAGUGACGUGCAAA   942 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance RPP13-like protein 4 (LOC4327629), transcript variant X2, mRNA	disease resistance RPP13-like protein 4(LOC4327629)	coding protein	psRNATarget
XM_015762434.1	ncRNA:21   UGGUAAACUCACUGUACGUUU   1   *||=||||||||||=|||||| targets:989   CCCGUUUGAGUGACGUGCAAA   1009 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance RPP13-like protein 4 (LOC4327629), transcript variant X6, mRNA	disease resistance RPP13-like protein 4(LOC4327629)	coding protein	psRNATarget