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BaseInfo

ncRNA ID	novel_osa_miR2478
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:21639887-21640035 [+]
Reference genome	IRGSP-1.0
Source	SRR1849774
Length	22
Mature sequence(if miRNA)	128 - UUGGACUUGAGAUUUGGUGAGA - 149
Stem-loop(if miRNA)	-- UG      A                        U   UAAC      ----         UG           AU   U  CCAAAU UCAAGUUUAAACUCAACUUUAUUU GGG    AAAUAA    GACAAAUUU  GGUGAAUAGUA  A   |  |||||| |||||||||||||||||||||||| |||    ||||||    |||||||||  |||||||||||   A  GGUUUA AGUUCAGGUUUGAGUUGAAAUAAA CUC    UUUAUU    CUGUUUAAA  CCACUUAUCAU  U AG GU      G                        -   --UC      UUUA         GU           CG
Stem-loop sequence	UUGCCAAAUAUCAAGUUUAAACUCAACUUUAUUUUGGGUAACAAAUAAGACAAAUUUUGGGUGAAUAGUAAUAUGCUACUAUUCACCUGAAAUUUGUCAUUUUUAUUUCUCUCAAAUAAAGUUGAGUUUGGACUUGAGAUUUGGUGAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403773.1	ncRNA:22   AGAGUGGUUUAGAGUUCAGGUU   1   ||||||||||||||||||=||| targets:77   UCUCACCAAAUCUCAAGUUCAA   98 Target Full Sequence	1.5	Sequence 1898 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235903.1	ncRNA:22   AGAGUGGUUUAGAGUUCAGGUU   1   ||||||||||||||||||=||| targets:77   UCUCACCAAAUCUCAAGUUCAA   98 Target Full Sequence	1.5	Sequence 1898 from Patent EP2985353	NA	coding protein	psRNATarget
JB164234.1	ncRNA:22   AGAGUGGUUUAGAGUUCAGGUU   1   ||||||||||||||||||=||| targets:77   UCUCACCAAAUCUCAAGUUCAA   98 Target Full Sequence	1.5	Sequence 1898 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235928.1	ncRNA:22   AGAGUGGUUUAGAGUUCAGGUU   1   ||*=|||||||||||||||||| targets:27   UCAUACCAAAUCUCAAGUCCAA   48 Target Full Sequence	1.0	Sequence 1923 from Patent EP2985353	NA	coding protein	psRNATarget
JB164259.1	ncRNA:22   AGAGUGGUUUAGAGUUCAGGUU   1   ||*=|||||||||||||||||| targets:27   UCAUACCAAAUCUCAAGUCCAA   48 Target Full Sequence	1.0	Sequence 1923 from Patent EP2559767	NA	coding protein	psRNATarget
HI403798.1	ncRNA:22   AGAGUGGUUUAGAGUUCAGGUU   1   ||*=|||||||||||||||||| targets:27   UCAUACCAAAUCUCAAGUCCAA   48 Target Full Sequence	1.0	Sequence 1923 from Patent EP2074227	NA	coding protein	psRNATarget
JB164611.1	ncRNA:22   AGAGUGGUUUAGAGUUCAGGUU   1   ||*=|=|||||||||||||||| targets:27   UCAUAUCAAAUCUCAAGUCCAA   48 Target Full Sequence	2.0	Sequence 2275 from Patent EP2559767	NA	coding protein	psRNATarget
HI404150.1	ncRNA:22   AGAGUGGUUUAGAGUUCAGGUU   1   ||*=|=|||||||||||||||| targets:27   UCAUAUCAAAUCUCAAGUCCAA   48 Target Full Sequence	2.0	Sequence 2275 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236280.1	ncRNA:22   AGAGUGGUUUAGAGUUCAGGUU   1   ||*=|=|||||||||||||||| targets:27   UCAUAUCAAAUCUCAAGUCCAA   48 Target Full Sequence	2.0	Sequence 2275 from Patent EP2985353	NA	coding protein	psRNATarget
HI403625.1	ncRNA:22   AGAGUGGUUUAGAGUUCAGGUU   1   ||*=||||=||||||||||||| targets:27   UCAUACCAGAUCUCAAGUCCAA   48 Target Full Sequence	2.0	Sequence 1750 from Patent EP2074227	NA	coding protein	psRNATarget
JB164086.1	ncRNA:22   AGAGUGGUUUAGAGUUCAGGUU   1   ||*=||||=||||||||||||| targets:27   UCAUACCAGAUCUCAAGUCCAA   48 Target Full Sequence	2.0	Sequence 1750 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235755.1	ncRNA:22   AGAGUGGUUUAGAGUUCAGGUU   1   ||*=||||=||||||||||||| targets:27   UCAUACCAGAUCUCAAGUCCAA   48 Target Full Sequence	2.0	Sequence 1750 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015769504.1	ncRNA:22   AGAGUGGUUUAGAGUUCAGGUU   1   *=||||*||||||=|||||||| targets:1577   CUUCACAAAAUCUUAAGUCCAA   1598 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable carboxylesterase 12 (LOC107280084), mRNA	probable carboxylesterase 12(LOC107280084)	coding protein	psRNATarget
XM_015783118.1	ncRNA:22   AGAGUGGUUUAGAGUUCAGGUU   1   ||-||||||||*|||||||||| targets:1545   UC-CACCAAAUAUCAAGUCCAA   1565 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein FAR1-RELATED SEQUENCE 5-like (LOC107280963), mRNA	protein FAR1-RELATED SEQUENCE 5-like(LOC107280963)	coding protein	psRNATarget
CT832946.1	ncRNA:22   AGAGUGGUUUAGAGUUCAGGUU   1   *|*=|||||||*|||||||||| targets:809   CCAUACCAAAUGUCAAGUCCAA   830 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240N02, full insert sequence	NA	coding protein	psRNATarget
AK065400.1	ncRNA:22   AGAGUGGUUUAGAGUUCAGGUU   1   *|*=|||||||*|||||||||| targets:865   CCAUACCAAAUGUCAAGUCCAA   886 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013020I02, full insert sequence	NA	coding protein	psRNATarget