Search result

BaseInfo

ncRNA ID	novel_osa_miR2475
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:14372271-14372336 [-]
Reference genome	IRGSP-1.0
Source	SRR1849774
Length	24
Mature sequence(if miRNA)	1 - AUUAAUAGUAUUAGGAUGUGUCAU - 24
Stem-loop(if miRNA)	--               A  G     A    AA   GACACAUUCUAGUAC AU AAUCU AAUA  U   ||||||||||||||| || ||||| ||||   CUGUGUAGGAUUAUG UA UUAGA UUGU  A UA               A  A     C    AU
Stem-loop sequence	GACACAUUCUAGUACAAUGAAUCUAAAUAAAUAUAUGUUCAGAUUAAUAGUAUUAGGAUGUGUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK067284.1	ncRNA:24   UA--CUGUGUAGGAUUAUGAUAAUUA   1   ||--||||||||*||=|||||||||| targets:2164   AUUAGACACAUCAUAGUACUAUUAAU   2189 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013100P21, full insert sequence	NA	coding protein	psRNATarget
XM_015759903.1	ncRNA:24   UACUGUGUAGGAUUAUGAUAAUUA   1   ||||*|||||=|||||||||*||| targets:2098   AUGAGACAUCUUAAUACUAUGAAU   2121 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group serine--tRNA ligase, chloroplastic/mitochondrial (LOC4350906), mRNA	serine--tRNA ligase, chloroplastic/mitochondrial(LOC4350906)	coding protein	psRNATarget
XM_015758694.1	ncRNA:24   UACUGUGUAGGAUUAUGAUAAUUA   1   =|||=||||*|||||||*|||||| targets:264   GUGAUACAUGCUAAUACAAUUAAU   287 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group psbP-like protein 1, chloroplastic (LOC9268431), mRNA	psbP-like protein 1, chloroplastic(LOC9268431)	coding protein	psRNATarget
AK289083.1	ncRNA:24   UACUGUGUAGGAUUAUGAUAAUUA   1   =|||=||||*|||||||*|||||| targets:276   GUGAUACAUGCUAAUACAAUUAAU   299 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095G14, full insert sequence	NA	coding protein	psRNATarget
CT833051.1	ncRNA:24   UAC-UGUGUAGGAUUAUGAUAAUUA   1   |||-|*|||||=|||||||||*||| targets:596   AUGGAAACAUCUUAAUACUAUGAAU   620 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN042I02, full insert sequence	NA	coding protein	psRNATarget